SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34770

Length: 293 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene34770
ATGGTGCCGAAGGCATTGGCCTTTGCAGGACAGAACACATGTTCTTTGCATCAGAAAGTAGGATTAAGGCTGTCAGGGAGATGATTATGGCTGTCACGTCTGAACAACGGCAAGCAGCACTCGACAAGCTTCTACCTTATCAGCGAACTGATTTTGAAGGAATATTTCGGGCAATGGATGGTCTTCCTGTCACCATACGCCTTTTGGATCCACCCTTGCATGAGTTCCTTCCAGAGGGTGATATCAATGAAATAGTTTCTAAGTTAGCTTCAGAAACTGGTATAACTGAAGAT

Ace file of the UniGene sp_v1.1_unigene34770

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate, phosphate dikinase, chloroplastic n=1 Tax=Mesembryanthemum crystallinum RepID=PPDK_MESCR	-	-	7.00005e-41	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Blast2go	pyruvate orthophosphate dikinase	-	-	1.4013e-45	91%

Source	InterPros	Term	Type	e value	Identity
Blast2go	PEP-utilising enzyme, C-terminal	IPR000121	-	1.4013e-45	91%
Blast2go	Pyruvate/Phosphoenolpyruvate kinase	IPR015813	-	1.4013e-45	91%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LLH9

Fln msg: Distance to subject end: 224 aas, your sequence is shorter than subject: 97 - 963

Fln protein: GAEGIGLCRTEHMFFASESRIKAVREMIMAVTSEQRQAALDKLLPYQRTDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDINEIVSKLASETGITED

Protein Length: 98

Fln nts: ATGGTGCCGAAGGCATTGGCCTTTGCAGGACAGAACACATGTTCTTTGCATCAGAAAGTAGGATTAAGGCTGTCAGGGAGATGATTATGGCTGTCACGTCTGAACAACGGCAAGCAGCACTCGACAAGCTTCTACCTTATCAGCGAACTGATTTTGAAGGAATATTTCGGGCAATGGATGGTCTTCCTGTCACCATACGCCTTTTGGATCCACCCTTGCATGAGTTCCTTCCAGAGGGTGATATCAATGAAATAGTTTCTAAGTTAGCTTCAGAAACTGGTATAACTGAAGAT

Fln Alignment:

sp_v1.1_unigene34770___GAEGIGLCRTEHMFFASESRIKAVREMIMAVTSEQRQAALDKLLPYQRTDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDINEIVSKLASETGITED
B8LLH9_______________GAQGIGLCRTEHMFFASESRIKAVRQMIMAVTTEQRQAALDKLLPYQRSDFEGIFRAMDGLPVTIRLLDPPLHEFLPEGDINEIVSKLASETGVSED

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
19	33		33	33	0.997752
79		25	75		0.99649
81	75			25	0.99649
82		25	75		0.99649
83	75		25		0.99649
87		25		75	0.99649
88		25		75	0.99649
89	75			25	0.99649
184		25		75	0.996486

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain