SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34717

Length: 359 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene34717
CGTCGTGACCTTGGCTGTCACTCATAATATACGCCCCAGGATGCCCTAATGTCAACTGTGCTTCCACTGAAGACTTTGGTGAAGCAACAAGTATTTCGGCGAAGGCTGATGCTGTGGTTCTGGTGGTTGGATTGGACAGATCACTGGAAACAGAGAAACATGATCGGCAAAATCTGACTCTTCCGGGGGAACAGTCGAATCTAGTAACTGAAGTTGCGAGAGTTTCCAAAGGACCGGTGGTGCTTGTCATCATGAGTGGAGGACCAGTTGATGTCTCTTTTGCAATAAAGGATCCTCGCATTTCCAGCATTTTGTGGGTTGGCTACCCCGGTGAAGCTGGTGGCCTAGCACTGGCTGAA

Ace file of the UniGene sp_v1.1_unigene34717

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	glycosyl hydrolase family 3 protein	-	-	2.0e-31	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	glycosyl hydrolase family 3 protein	-	-	1.82592e-31	74%

Source	GOs	Term	Type	e value	Identity
Blast2go	hydrolase activity, acting on glycosyl bonds	GO:0016798	Molecular Function	1.82592e-31	74%
Blast2go	vacuole	GO:0005773	Cellular Component	1.82592e-31	74%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.82592e-31	74%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABI5

Fln msg: Distance to subject end: 208 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 117 - 304

Fln protein: PWLSLIIYAPGCPNVNCASTEDFGEATSISAKADAVVLVVGLDRSLETEKHDRQNLTLPGEQSNLVTEVARVSKGPVVLVIMSGGPVDVSFAIKDPRISSILWVGYPGEAGGLALAE

Protein Length: 118

Fln nts: CGTCGTGACCTTGGCTGTCACTCATAATATACGCCCCAGGATGCCCTAATGTCAACTGTGCTTCCACTGAAGACTTTGGTGAAGCAACAAGTATTTCGGCGAAGGCTGATGCTGTGGTTCTGGTGGTTGGATTGGACAGATCACTGGAAACAGAGAAACATGATCGGCAAAATCTGACTCTTCCGGGGGAACAGTCGAATCTAGTAACTGAAGTTGCGAGAGTTTCCAAAGGACCGGTGGTGCTTGTCATCATGAGTGGAGGACCAGTTGATGTCTCTTTTGCAATAAAGGATCCTCGCATTTCCAGCATTTTGTGGGTTGGCTACCCCGGTGAAGCTGGTGGCCTAGCACTGGCTGAA

Fln Alignment:

sp_v1.1_unigene34717___FGEATSISAKADAVVLVVGLDRSLETEKHDRQNLTLPGEQSNLVTEVARVSKGPVVLVIMSGGPVDVSFAIKDPRISSILWVGYPGEAGGLALAE
D5ABI5_______________FGEAVETAKKVDEVIVVVGLDQTQEKEERDRIKLTLPGQQENLVYQVSRAAKRPVVFVILSGGPVDVSFAVNDPQISSIIWAGYPGQAGGQALAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain