SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34706

Length: 497 nt

UniGene Fasta

>sp_v1.1_unigene34706
ATGGGATATAATTCTTATAGAGAATGAAGTTATTGTGTATGTCAAGGGCTTAAAGAATCCTCATTGAATCGATCAAGGATTCTCTCATCTCCTATGTAGCAAAGTTGAAAACATTGAAAGAAATCTATGACAAGATGGTGGGATTGTTCTTTGTAAGTACAGTAGGAGAAATAATATTGTTAGGAACCGAATTATACAAGATGAAAGTGTCAAAGGAAGAAGGGGTAGCTTCATATCTCATGAAGGTATCTCAAATAAGAGATCAACTACAAGAGCTAGGAGAGACAATGTCAGATCTAGAGATGACTACTCTTGTACCCAATACACTACCAGATGAATGGGGTAACTTTGTATCAAGCATATATGGAAAGAAAGAAGGCACTTTATTCAGTGATCTGTGGTCATTATGTAAGATTGAAGAAACTAGATTAAAGGCAAAGAATGATGTTGGTTCAAATGAGCAAACACAAGCATATGCAACTATGACAAGGAGGAAA

Ace file of the UniGene sp_v1.1_unigene34706

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gag-Pol n=1 Tax=Ipomoea batatas RepID=Q6BCY1_IPOBA	-	-	4.0e-06	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	37%
Blast2go	unknown [Picea sitchensis]	-	-	8.48152e-21	64%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8Y5

Fln msg: STOP codon was not found. Distance to subject end: 16 aas, Unexpected STOP codon in 5 prime region,

Fln protein: RILIESIKDSLISYVAKLKTLKEIYDKMVGLFFVSTVGEIILLGTELYKMKVSKEEGVASYLMKVSQIRDQLQELGETMSDLEMTTLVPNTLPDEWGNFVSSIYGKKEGTLFSDLWSLCKIEETRLKAKNDVGSNEQTQAYATMTRRK

Protein Length: 149

Fln nts: ATGGGATATAATTCTTATAGAGAATGAAGTTATTGTGTATGTCAAGGGCTTAAAGAATCCTCATTGAATCGATCAAGGATTCTCTCATCTCCTATGTAGCAAAGTTGAAAACATTGAAAGAAATCTATGACAAGATGGTGGGATTGTTCTTTGTAAGTACAGTAGGAGAAATAATATTGTTAGGAACCGAATTATACAAGATGAAAGTGTCAAAGGAAGAAGGGGTAGCTTCATATCTCATGAAGGTATCTCAAATAAGAGATCAACTACAAGAGCTAGGAGAGACAATGTCAGATCTAGAGATGACTACTCTTGTACCCAATACACTACCAGATGAATGGGGTAACTTTGTATCAAGCATATATGGAAAGAAAGAAGGCACTTTATTCAGTGATCTGTGGTCATTATGTAAGATTGAAGAAACTAGATTAAAGGCAAAGAATGATGTTGGTTCAAATGAGCAAACACAAGCATATGCAACTATGACAAGGAGGAAA

Fln Alignment:

sp_v1.1_unigene34706___ILIESIKDSLISYVAKLKTLKEIYDKMVGLFFVSTVGEIILLGTELYKMKVSKEEGVASYLMKVSQIRDQLQELGETMSDLEMTTLVPNTLPDEWGNFVSSIYGKKEGTLFSDLWSLCKIEETRLKAK
D5A8Y5_______________IIVDSIKDHLIPYISHFDSSKKMYDALTNLLSVRNIGLVMSLKNEPRDMKMNEDDIITSYFVRISQLRDQLQAIEEIISEKELVNIVLNGLPKTWDAFAASMNTRKEYLTFEELWTCCAQEESRINAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain