SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34666

Length: 1270 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene34666 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Charged multivesicular body protein 4b, putative n=2 Tax=rosids RepID=B9RKD5_RICCO	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Blast2go	protein	-	-	87%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Snf7	IPR005024	-	0.0	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AE50

Fln msg:

Fln protein: MFNKLFKKPKEETSALATIDKLSETLEMLEKKEKVLQKKISVEIEKAKEFTRRKNKRAAIQCLKRKKLYETQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGALAMKTIQKAMNIDDIDKTMDEVNEHTENLKQIQEALATPIGSAADIDEDELEAELEELEGAELEEQLLQPATTAPSSQIPAVPASQRPVTVPPQRTAPQSRSEDDELAALQAEMAL*

Protein Length: 225

Fln nts: GGAAATTCCCGTGGAGGTGAGCACGGGTCGCATAAGGCGGCAGATGCCGGAAAATCCCTTCTTTTTCTTCTCCTGATCTTCGACCGGCAACGTTGTCTTGAGAACTCATCCATCCTTCATTGCCATTTTGCAGAGGGTTTTATGCTCGGAATTGAAATAATTGTGAGGGTTTAGTGTTGATTGAGGGTTTAACGGGGTCCAATCCAGCCGATAATCGCAGTAATTCAAG_-_ATGTTTAACAAGCTCTTCAAAAAGCCGAAGGAGGAAACTTCGGCACTTGCCACTATAGACAAGCTCAGCGAGACATTAGAAATGTTGGAGAAGAAAGAGAAAGTTTTGCAGAAAAAAATCTCTGTTGAAATTGAAAAAGCTAAGGAGTTTACGCGGCGGAAAAATAAGAGGGCTGCAATTCAGTGTCTGAAGAGGAAAAAATTGTATGAAACTCAAGTAGAGCAGCTTGGTAACTTCCAGCTACGAATACATGATCAGATGATTATGTTGGAAGGTGCAAAAGCAACAACAGAAACTGTAGACGCTCTCAGAACAGGAGCATTGGCAATGAAGACCATCCAAAAAGCAATGAATATAGATGACATTGATAAAACAATGGATGAGGTCAATGAGCACACAGAGAACTTGAAACAGATTCAAGAGGCTCTTGCTACTCCAATTGGTTCTGCAGCTGATATTGATGAGGATGAATTGGAGGCTGAGCTTGAAGAGCTAGAAGGAGCAGAGCTGGAAGAACAATTATTACAGCCAGCAACCACAGCACCTTCATCTCAGATACCTGCTGTTCCTGCTTCTCAACGACCTGTGACAGTTCCTCCACAGAGAACAGCTCCTCAAAGTAGATCTGAAGATGATGAGCTTGCTGCTCTTCAAGCAGAGATGGCTTTGTGA___TCAATATAAGGTCAAAGCAAAAAATGACGGTGTACTACTCACTTGTAGCTATATATCCTTATTTTCAATTAAATTGGCCAAAATCAGGATGACACTGCAGTTCCTGCTGATGTATAAAAATATCTAAATATTCCAGCTGCATTTTAATGCTACGACATTATGTAGTTTATTTCTTAGAATTTACAACTTGTTTATGAAGACAACCTGGGTAGAGCCCCCAGTTCCATATACATTGAGAAGCATTAGCCCCTTGCTTGGGACATTGCTTAATCTGTTGAAGAACCTAGGGCTGTCATATTAAGGTGATTCTTCTTTAACATGAAAGCAATTTGTGAAGCATTTATACTATTTATCTTTGCTTAATGTCCA

Fln Alignment:

sp_v1.1_unigene34666___MFNKLFKKPKEETSALATIDKLSETLEMLEKKEKVLQKKISVEIEKAKEFTRRKNKRAAIQCLKRKKLYETQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGALAMKTIQKAMNIDDIDKTMDEVNEHTENLKQIQEALATPIGSAADIXXXXXXXXXXXXXXXXXXXXXXQPATTAPSSQIPAVPASQRPVTVPPQRTAPQSRS
D5AE50_______________MFNKLFKKPKEETSALATIDKLNETLEMLEKKEKVLQKKISVEIEKAKEFTRRKNKRAAIQCLKRKKLYETQVEQLGNFQLRIHDQMIMLEGAKATTETVDALRTGALAMKTIQKAMNIDDIDKTMDEVNEHTENMKQIQEALATPIGSAADIDEDELEAELEELEGAELEEQLLQPATTAPSSQIPAVPASQRPVPAAPQRTAPQSRT

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
34		50		50	1.0
1129	86	13			0.999973
1160		11	88		0.923572
1185		12	87		0.992555
1186	87	12			0.992555
1187		12	87		0.992555
1188	12			87	0.992556
1194	85			14	0.993536
1195		14	85		0.993535
1196	85	14			0.993535
1198	85	14			0.993533
1199	71	14		14	0.984352
1201		20	20	40	1.0
1202	20		60	20	0.99255
1203	33			66	1.0
1204		25	50		1.0
1205		25		75	0.996473
1207	40	40	20		1.0
1208		75		25	0.996473
1209	40		40	20	1.0
1212		50		50	1.0
1213		50	50		1.0
1214	50			50	1.0
1215	50	50			1.0
1216		25	75		0.996473
1217	60		40		1.0
1218	40		20	40	1.0
1219		75	25		0.996473
1221		40	40		1.0
1224	20	40			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain