SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34647

Length: 1070 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene34647 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=1 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	3.0e-17	32%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	protein	-	-	0.0	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: ERROR#3, very serious frame error, Separated hits, possible frame ERROR between 334 and 723, your sequence is shorter than subject: 335 - 482

Fln protein: LDLSWCQKLERLPDSFGSLWNLHSLDLRR*PANLERLPDSFGSLPSLVYFNAWDCANLTISSETFGNIRTLEHIDLSGCEKVEVWPTQLAHQRSLKTLRLTGTNLKEELPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKKCNELQELPSVKTLVSLDVVHCEKLNSIRDLAHQTELWRLHVRGCPELEKLEGVEYCTSLCDFSVEGCHKLRLGERVVERLRQKCKHFDLE*

Protein Length: 336

Fln nts: CTTGGACCTGAGTTGGTGCCAGAAATTGGAGAGGCTGCCAGATTCTTTCGGCAGCTTGTGGAACCTCCACAGCTTGGACCTGCGTCGGTAGCCAGCAAATTTGGAGAGGCTGCCAGATTCTTTCGGGAGTTTACCTAGCCTTGTATATTTTAATGCTTGGGATTGTGCTAATTTAACAATCTCAAGCGAAACATTTGGAAATATAAGAACACTGGAGCATATAGATCTTTCCGGGTGTGAAAAAGTTGAAGTCTGGCCCACGCAACTGGCCCATCAAAGGTCCCTGAAAACACTGAGGTTGACGGGCACAAATTTGAAGGAAGAATTGCCAAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGAAAAAGTGTAACGAACTTCAGGAGCTGCCGAGTGTTAAAACATTGGTGTCCTTGGATGTAGTACATTGTGAGAAGTTGAATAGCATACGGGATTTGGCGCACCAAACAGAGCTTTGGAGACTACATGTTCGGGGGTGCCCTGAGTTGGAGAAGCTGGAGGGAGTTGAATATTGTACATCGTTATGTGATTTTTCTGTCGAGGGGTGTCATAAATTGCGGTTGGGTGAGAGAGTAGTAGAGaGGCTGCGCCAGAAATGTAAgcACTTTGACTTGGAGTAACCAAATCGAAATCAAAATTGAATTTTTCAGGTTTGTAATATAAATATAAATGGTATTTTAACCGGG

Fln Alignment:

sp_v1.1_unigene34647___LDLSWCQKLERLPDSFGSLWNLHSLDLRR*PANLERLPDSFGSLPSLVYFNAWDCANLTISSETFGNIRTLEHIDLSGCEKVEVWPTQLAHQRSLKTLRLTGTNLKEELPSVIELPSDLEVLSIANPLLDTVMPSXXXXXXXXXXXLEYRREVKCLPASLERPSQLRWLKVAACPII--------------------------------------HTSEVLSDEVVYPNLRYFILEECINVVEIGTLPKALTSVTLDRCYNLRSIQALCGLPMLQYLHIEKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLKKCNELQELPSVKTLVSLD---VVHCEKLNSIRDLAHQTELWRLHVRGCPELEKLEGVEYCTSLCDFSVEGCHK
D5AB91_______________INLTLCRKLERLPDSFGSLMNLHHLDLSL-CKKLERLPNSFGSCNRIKYLNSSCCSNLTISSDTLGNIRTLEHIDFSGCGKIELWPLQLAHQRSLKILKLTGTNIK-ELPSAIEVPTDLEVLWAGSPLLDTLYPLLGDLKNLKELRLKDCRELKCLPASVGRLSQLTQLEVAGCPAIELLFKKVREQRETVRTLKFNSSIHKYMPCLQELTPQDTEISEVSFDEGVCPNLRKFILRECINLVEVGTLPNTLTYVKVSSCYNLRSIEGLSGLAMLQSLVIRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRKCNELHELLSVKTLVALESLYAIDCVKLKSIRELAQLTKPSHLDVSGCLELEKLEGVEYCRSLFQVVARRCPK

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
84		50		50	1.0
85	33		66		1.0
86		33	66		1.0
88		50		50	1.0
107		33		66	1.0
111		50		50	1.0
503	50		50		1.0
768	25		75		0.996473
923		50		50	1.0
982	50			50	1.0
1056		20	80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain