SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34608

Length: 1478 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene34608 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ebs-bah-phd domain-containing protein n=7 Tax=Magnoliophyta RepID=B9IAJ0_POPTR	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	99%
Blast2go	ebs-bah-phd domain-containing protein	-	-	89%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of flower development	GO:0009911	Biological Process	89%
Blast2go	seed germination	GO:0009845	Biological Process	89%
Blast2go	binding	GO:0005488	Molecular Function	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NKF8

Fln msg:

Fln protein: MAKTRPAKKSLDAYTIKGTNKVVRAGDCVLMRPSDSDKPPYVARVEKIESDIRNNVKVKVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSADTIEGKCTVHSFKNYTKLESVGADDYFCRFEYKSATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPACMNMTPEQAKKVDHFFCPSCSSEDEDKKTRNSHVASPLAEAKLESKRRKR*

Protein Length: 218

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGGTTATGGGGGTGAGAGGATGGCTGAGATCTATTATATTCTTCTAATTCTATCTTCGTCGTCATACTGGCTTACTGATATAGTAGAAGTAGCAGGAGCGAGAGTAAT_-_ATGGCTAAGACGCGGCCTGCTAAAAAATCCTTGGATGCATATACCATCAAGGGAACCAACAAAGTCGTCAGAGCGGGAGATTGCGTGTTGATGCGCCCGTCGGATTCCGATAAGCCTCCGTATGTAGCTCGAGTAGAGAAAATCGAAAGCGATATCCGGAATAACGTGAAAGTTAAGGTTCGTTGGTATTACAGGCCCGAGGAATCGATCGGTGGGCGGAGGCAGTTCCATGGTGCCAAGGAGCTCTTCCTTTCCGACCACTTTGATGTGCAGAGTGCTGACACAATCGAGGGCAAATGTACAGTTCACAGCTTCAAGAACTACACCAAGCTCGAGAGTGTTGGTGCCGATGATTATTTCTGCCGGTTTGAGTACAAATCTGCTACCGGTGGTTTCACCCCAGACAGAGTGGCAGTGTACTGTAAATGCGAGATGCCCTACAATCCTGATGACCTAATGGTGCAGTGCGAAGGATGCAAAGACTGGTTTCACCCTGCATGTATGAATATGACTCCAGAACAAGCAAAGAAAGTGGATCACTTTTTCTGTCCTAGTTGTTCCTCTGAAGATGAGGACAAAAAGACTCGAAATTCTCATGTTGCTTCACCACTGGCAGAGGCAAAGCTGGAATCCAAACGGCGAAAGAGGTGA___CTGTATTGGTAGTTCAGTTTTCATTTTAGACTGTAACAAAGCAGAACTTTCTTGGGAAGGTGAAATGATTCAACAAGTGTGCAGGGAAATATGTATTAAATCAAGGATATTTATAGGCATATTTCAGTCTCCATGTTGAGGGTTCATTGTACAGTTTAATATGTTAATCTATGGTATGAGCCTCTAATTCAAATTTGAGCTGGCTGGGTAAGATGCATATTATGCTTTCTACATAAATGCTCAAGTGAAACATATTTTGTGTGTGCACTGTGTGGAGTCTTTCAGTTCAGGGTCATATTGCTAAGAGTCGATGGGGAAGTATTGTCATTTTCCGAACAAGTTTCATTTAGGGGACAATAACATCTTCTACTGTACTATGTGTATTTTCAACTCAGATTTTGTGAACTAGGTTTGAACGTCTTATATTTTGTTTTACAATGGTCATGGCCTTTAAGTTATGTCGGATAGTTGTACAAGTTTGGTTGAAAACTTGAAACAACTAGAAATTTGAATTATTGCCATTGAATTTGACAATGATGAAATGTGATGATGTATTAATGGCTATATGTGTAAGAGGTCGATATTTTGATTGCTAAAAGCTGCAAATTCCCTTAAAGGTTATTTTCACTTCCTTTGGAGCATGAAAAATATGTAATTGGAATGCAATTCATCTATGCCTGCAACGCTATAGTAG

Fln Alignment:

sp_v1.1_unigene34608___MAKTRPAKKSLDAYTIKGTNKVVRAGDCVLMRPSDSDKPPYVARVEKIESDIRNNVKVKVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSADTIEGKCTVHSFKNYTKLESVGADDYFCRFEYKSATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPACMNMTPEQAKKVDHFFCPSCSSEDEDKKTRNSHVASPLAEAKLESKRRKR
A9NKF8_______________MAKTRPAKKSLDSYTIKGTNKVVRAGDCVLMRPSDSDKPPYVARVEKIESDIRNNVKVKVRWYYRPEESIGGRRQFHGAKELFLSDHFDVQSADTIEGKCTVHSFKNYTKLESVGADDYFCRFEYKSATGGFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWFHPACMNMTPEQAKKVDHFFCPSCSSEDEDKKTRNSHVASPLAEAKLESKRRKR

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
1214		12		87	0.999964
1226		12		87	0.999964
1392	10			90	0.90298
1393		70	30		1.0
1394	90			10	0.902981
1396	10			90	0.90298
1398	90	10			0.90298
1403	30	70			1.0
1404	55	33		11	1.0
1405	30	30	40		1.0
1406	10	30	30	30	1.0
1407	60		40		1.0
1408	30			70	1.0
1409		42	57		1.0
1421	75		25		0.996479
1428	75	25			0.996479
1429			25	75	0.996479
1441	66	33			0.997461
1442	66	33			0.997461
1443		33		66	0.997461
1445			66	33	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain