SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34527

Length: 1056 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene34527

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	zinc finger (C3HC4-type RING finger) family protein	-	-	1.0e-10	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	ring zinc finger	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	70%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	70%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	70%

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
61			50	50	1.0
65	50			50	1.0
66			50	50	1.0
67	50			50	1.0
71	50			50	1.0
72	50		50		1.0
73			50	50	1.0
77	50			50	1.0
83	50			50	1.0
100		25	75		0.99649
146	25		75		0.996483
154	75	25			0.996474
195	33			66	0.997476
430	25	75			0.996473
433			75	25	0.996473
434		75	25		0.996473
437			75	25	0.996474
438		50	50		0.999786
439	25		75		0.996474
453			75	25	0.988932
540	44	44			1.0
802	16		83		0.994513
810		12	87		0.992554
991		60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain