SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34480

Length: 548 nt

Origin of reads: Biogeco_1 Uagpf

UniGene Fasta

>sp_v1.1_unigene34480
CGTCGTGACCTTGGCTGTCACTCAGTTGGTATGCATGTTGATGTGCGAAGAAGAGCAAGAGCTGATACAAAGTTGGGTTCTCTGTTATTGACAAATACCGAGCAGAGTAGGGTGCACATTCGTATTTTCTGCCGCTTGCATTGTATTTTCAGATTCTTCACAGATGCAGGGGATTGAACAAGGTGACGATGTGAAGGGAAGTTCAGCACCTTTTGAAGAAGTGCAACAACCATGTTTGGCTTCAATGAGAGCATTTATGCAGGGAGCTTATGTTTATGGAATTGTGGCTGGGTATTGTGTTTCTGCATCCCTGTTATCAATCATCAACAAGTGGCGATCATGAAATTTCCTTTTCCTGGATCTTTGACCGCTATGCAGTATTTTTCAAGTGTGTCAGGAGTACTCATACTTGGCTGGTTGAAACTTTTGGAACATGATAAACTTGATTTACAAACTATGTGGAGATTTTTTACCTGCTGCAATGGTCTTCTATTTATCACTGTTCACAAATAGTGAACTACTGCTCCATGCAAATGTTGATACATTTA

Ace file of the UniGene sp_v1.1_unigene34480

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GONST3 Golgi Nucleotide sugar transporter n=2 Tax=Arabidopsis RepID=Q9S845_ARATH	-	-	4.0e-16	44%
FL-Next	sp=GDP-mannose transporter GONST3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	44%
Blast2go	integral membrane family protein	-	-	6.30293e-16	55%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleotide-sugar transport	GO:0015780	Biological Process	6.30293e-16	55%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9S845

Fln msg: Distance to subject end: 246 aas, your sequence is shorter than subject: 128 - 372

Fln protein: MQGIEQGDDVKGSSAPFEEVQQPCLASMRAFMQGAYVYGIVAGYCVSASLLSIINKWRS*NFLFLDL*PLCSIFQVCQEYSYLAG*NFWNMINLIYKLCGDFLPAAMVFYLSLFTNSELLLHANVDTF

Protein Length: 129

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGGTATGCATGTTGATGTGCGAAGAAGAGCAAGAGCTGATACAAAGTTGGGTTCTCTGTTATTGACAAATACCGAGCAGAGTAGGGTGCACATTCGTATTTTCTGCCGCTTGCATTGTATTTTCAGATTCTTCACAG_-_ATGCAGGGGATTGAACAAGGTGACGATGTGAAGGGAAGTTCAGCACCTTTTGAAGAAGTGCAACAACCATGTTTGGCTTCAATGAGAGCATTTATGCAGGGAGCTTATGTTTATGGAATTGTGGCTGGGTATTGTGTTTCTGCATCCCTGTTATCAATCATCAACAAGTGGCGATCATGAAATTTCCTTTTCCTGGATCTTTGACCGCTATGCAGTATTTTTCAAGTGTGTCAGGAGTACTCATACTTGGCTGGTTGAAACTTTTGGAACATGATAAACTTGATTTACAAACTATGTGGAGATTTTTTACCTGCTGCAATGGTCTTCTATTTATCACTGTTCACAAATAGTGAACTACTGCTCCATGCAAATGTTGATACATTTA

Fln Alignment:

sp_v1.1_unigene34480___DDVKGSSAPFEEVQQPCLASMRA-FMQGAYVYGIVAGYCVSASLLSIINKWRS*NFLFLDL*PLCSIFQVCQEYSYLAG*NFWNMINLIYK------LCGDFLPAAMVFYLSLFTNSELLLHANVDTF
Q9S845_______________DEENGTVIEVKNVPEPSPETWYSVFLRQASVYGVAAGYCLSASLLSIINKWAIMKF------PYPGALTAMQYFTSAAGVLLCAQMKLIEHDSLNLLTMWRFLPAAMIFYLSLFTNSELLLHANVDTF

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
336			66	33	0.997452
337			33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain