SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34476

Length: 472 nt

Origin of reads: Uma

UniGene Fasta

>sp_v1.1_unigene34476
CGGAGGATTGCGAAACTGTTAATCAATCACAGCAACAGTTGGAGACACTCAAGGGCATCATATCCAGTAGCTGTTCTGCAGATTCGGATGTGTTTGCTGAAACATGCAAGTCCCTGGAAATGGCCAACAAAATGCAACAACAACCCAAATGCCTTAAACAGTTGGTGATTTGTCATCTTCAAAATGTGGGATATAATGCAGCCATCTGCAAATCGCGTCCACAGGATAATAGAACCTTTCCTTCAGGCAACTATGAGTACATTGACGTGATATTGAAGACCACAAATTCAGACAGAAGCATTCGATTGTTTGTGGACTTGGATTTCAGAGGGCAGTTTGAGATAGCGAGACCCACCAGCGAATACAGCGCCCTCCTTGGGTTGCTTCCCAAGATATATGTGGGGATGGCTCATAAATTGCAGTCCATTGTGAGGATAATGTGCAAAGCCGTGAAGAAGTCGTTAGAGAGGAA

Ace file of the UniGene sp_v1.1_unigene34476

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF506 domain containing protein	-	-	3.0e-36	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	protein	-	-	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF506, plant	IPR006502	-	0.0	63%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2B0

Fln msg: Distance to subject end: 144 aas, your sequence is shorter than subject: 156 - 361

Fln protein: EDCETVNQSQQQLETLKGIISSSCSADSDVFAETCKSLEMANKMQQQPKCLKQLVICHLQNVGYNAAICKSRPQDNRTFPSGNYEYIDVILKTTNSDRSIRLFVDLDFRGQFEIARPTSEYSALLGLLPKIYVGMAHKLQSIVRIMCKAVKKSLER

Protein Length: 157

Fln nts: CGGAGGATTGCGAAACTGTTAATCAATCACAGCAACAGTTGGAGACACTCAAGGGCATCATATCCAGTAGCTGTTCTGCAGATTCGGATGTGTTTGCTGAAACATGCAAGTCCCTGGAAATGGCCAACAAAATGCAACAACAACCCAAATGCCTTAAACAGTTGGTGATTTGTCATCTTCAAAATGTGGGATATAATGCAGCCATCTGCAAATCGCGTCCACAGGATAATAGAACCTTTCCTTCAGGCAACTATGAGTACATTGACGTGATATTGAAGACCACAAATTCAGACAGAAGCATTCGATTGTTTGTGGACTTGGATTTCAGAGGGCAGTTTGAGATAGCGAGACCCACCAGCGAATACAGCGCCCTCCTTGGGTTGCTTCCCAAGATATATGTGGGGATGGCTCATAAATTGCAGTCCATTGTGAGGATAATGTGCAAAGCCGTGAAGAAGTCGTTAGAGAGGAA

Fln Alignment:

sp_v1.1_unigene34476___EDCETVNQSQQ-QLETLKGIISSSCSADSDVFAETCKSLEMANKMQQQ--PKCLKQLVICHLQNVGYNAAICKSRPQDN----RTFPSGNYEYIDVILKTTNSDRSIRLFVDLDFRGQFEIARPTSEYSALLGLLPKIYVGMAHKLQSIVRIMCKAVKKSLER
A9P2B0_______________EDCQSVLQSEENQLEILKGCISCTCPAELDLLAETAQCLEMARKLQQQQQPEFLKQSVMCHLRNVGYDAAICKSHPKDNSRSCRSFPSGNYEYMDVIMKSTNSRRSIRLIVDLDFKAQFEIARPTREYSTLLGLLPKIYVGRDHRLQSIVKIMCEGVKNSLKK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain