SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34375

Length: 1209 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene34375 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative	-	-	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	69%
Blast2go	avirulence-responsive avirulence induced gene aig	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AIG1	IPR006703	-	0.0	73%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPU8

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MEGRGGGGTSKVSTIVLVGRTGNGKSATGNSILGRKAFQCRSGSSTVRGTCELQQLQMKDGRKLNVIDTPGLFDPTVKQDVIGKEISKCIDLAKDGVHAVLFVLSVRNRYTPEEAAALQTLQMLFGEKILNYMVVIFTGGDELEANEETLEDYLREIPLDLQEILRKCNDRKVLFDNKTTSERVKEKQRTELLKHIDIIIAQNGGHPYSNELFHEAQEWSSKQKDVDSGPYSNEQVQVYMENIQKAQEEQLKELQEMGQENLHMATKVFEQRVAEQRSAREEIEKKCREKILELEEQLRIQQESALDSRQLRIQPESALGIPKRKSALRKPRNLSCNIGL*

Protein Length: 342

Fln nts: ATGGGGATTCATTCAGGGGGAAGTTTCAGGAGCTTTCAGGTTGAAACGATAGA_-_ATGGAAGGAAGGGGAGGAGGAGGTACCAGTAAGGTGTCCACTATAGTGTTGGTAGGCCGGACGGGCAATGGTAAAAGTGCAACTGGTAATTCCATACTTGGGCGCAAGGCCTTTCAGTGTCGCTCTGGTTCTTCGACAGTTAGAGGCACTTGTGAATTGCAACAACTGCAGATGAAAGATGGCAGAAAATTGAACGTGATCGATACACCAGGTCTCTTTGACCCGACTGTCAAGCAGGATGTTATCGGCAAAGAAATTTCCAAATGTATTGACCTCGCAAAGGATGGTGTCCATGCAGTTCTTTTCGTACTTTCCGTTAGAAACCGATATACCCCAGAAGAAGCAGCTGCTTTGCAGACCTTGCAAATGTTGTTTGGTGAAAAGATTCTCAATTACATGGTGGTTATCTTTACTGGTGGCGATGAGTTGGAAGCAAATGAAGAGACATTAGAAGACTATTTGCGTGAGATCCCACTTGACCTTCAGGAGATTCTAAGGAAGTGCAATGATAGGAAGGTCCTTTTCGATAATAAAACCACATCAGAGAGAGTCAAAGAAAAGCAAAGAACTGAATTGTTGAAGCATATAGACATTATAATTGCTCAAAATGGAGGCCATCCCTATTCTAATGAGTTGTTCCACGAAGCTCAGGAATGGTCAAGTAAGCAGAAGGATGTCGACTCTGGTCCATATTCGAACGAACAAGTACAGGTTTATATGGAAAATATTCAAAAAGCACAAGAGGAACAGCTTAAGGAATTGCAGGAAATGGGACAAGAGAACTTGCATATGGCTACAAAAGTATTCGAACAACGGGTGGCAGAGCAGCGTTCTGCGCGAGAAGAGATTGAGAAAAAATGCCGTGAAAAAATCCTTGAGCTTGAAGAGCAACTGCGAATTCAACAAGAATCAGCTTTGGATTCAAGGCAACTGCGAATTCAACCGGAATCAGCTTTGGGAATCCCTAAGCGGAAATCAGCTTTGCGAAAACCTAGGAACCTCTCCTGTAATATTGGTCTCTAATTCTGTTTCAAAACTCAGCAATATATATTATCCAAAGGCTTCTGCGTTGTAGGTGTTTATTTTTAGCATGTGCAACCTAGGTTTGAAGTATACGATCTTGATTTACTAGTTGAACATCTCTCAAGCTTTAACC

Fln Alignment:

sp_v1.1_unigene34375___GGTSKVSTIVLVGRTGNGKSATGNSILGRKAFQCRSGSSTVRGTCELQQLQMKDGRKLNVIDTPGLFDPTVKQDVIGKEISKCIDLAKDGVHAVLFVLSVRNRYTPEEAAALQTLQMLFGEKILNYMVVIFTGGDELEANEETLEDYLREIPLDLQEILRKCNDRKVLFDNKTTSERVKEKQRTELLKHIDIIIAQNGGHPYSNELFHEAQEWSSKQKDVDSGPYSNEQVQVYMENIXXXXXXXXXXXXXXXXENLHMATKVFEQRVAEQRSA
B8LPU8_______________GPTTGVTTLVLVGRTGNGKSATGNSILGRKAFKSRSRSGAVTQTSELQHVEMNDGRQLNVIDTPGLFDPTVNPDFLGKEIVKCIDLAKDGLHGVLFVLSVRNRFTAEEAAALESLQMLFGEKILNFMVVIFTGGDELEENLETLEDYLHESPLELQELLRQCNHRKVLFNNKTTSETTMARQITELLKQIDIVVAQNGGHPYSNELFHEAQERLNRQKDIDSGGYSKEEIQFLQKQMENAYAEQLKQLTEMVEEKLRITTERLEQRLSSEQSA

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
377		33		66	0.997452
449	87	12			0.992554
450		12		87	0.992554
484	87	12			0.992554
485		12	87		0.992554
486	87	12			0.992554
487	12		87		0.992554
499		57	42		1.0
866		14	85		0.993533
867	85	14			0.993533
868	85	14			0.993533
870	85			14	0.993533
905	60		40		1.0
913	50	33	16		1.0
938	50	50			1.0
939		50		50	1.0
1037		60	40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain