SustainPineDB

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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34304

Length: 425 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene34304
GAATTAGCTATGACGGTCTGGAGGAAGAGGAGAAGAACATATTCTTAGACATTGCTTGTTCTTTCTGCACAAAGACAGAGATACAGCGATGAGAATATGGGACGGATCTGGCTGGGAAGGAAAGCNGGGTTTTCGGAATCTACAAAACAGGTGTCTCGTAGAGGTAAACGACAACAATCAAATAACAATGCACGACCACCTCAGGGATATGGGCAGAGACCTGGCGCAGAAAGAGCCTCCAGACTGTTGGCGTCGTATTTGGCGTCCAACTGACAACCTTCTTTATCAGCACTCACCTCTACGTAGAGTGAACCTTTAGAGTGACACTGAAAATAATGTTCTGATATCAAACTTTGAAATGCCGTTATGGTGTGAATTGTCTGTAAATTTTGAGTTTTTTCATCTAATTTGCATAAATATCGATC

Ace file of the UniGene sp_v1.1_unigene34304 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative NBS-LRR protein G6236 (Fragment) n=2 Tax=Pinus monticola RepID=Q6WE71_PINMO	-	-	2.0e-23	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Blast2go	nbs lrr	-	-	1.80379e-24	78%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ADI3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 201 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 102 - 323

Fln protein: RSGGRGEEHILRHCLFFLHKDRDTAMRIWDGSGWEGKLGFRNLQNRCLVEVNDNNQITMHDHLRDMGRDLAQKEPPDCWRRIWRPTDNLLYQHSPLRRVNL*

Protein Length: 103

Fln nts: GAATTAGCT_-_ATGACGGTCTGGAGGAAGAGGAGAAGAACATATTCTTAGACATTGCTTGTTCTTTCTGCACAAAGACAGAGATACAGCGATGAGAATATGGGACGGATCTGGCTGGGAAGGAAAGCtGGGTTTTCGGAATCTACAAAACAGGTGTCTCGTAGAGGTAAACGACAACAATCAAATAACAATGCACGACCACCTCAGGGATATGGGCAGAGACCTGGCGCAGAAAGAGCCTCCAGACTGTTGGCGTCGTATTTGGCGTCCAACTGACAACCTTCTTTATCAGCACTCACCTCTACGTAGAGTGAACCTTTAGAGTGACACTGAAAATAATGTTCTGATATCAAACTTTGAAATGCCGTTATGGTGTGAATTGTCTGTAAATTTTGAGTTTTTTCATCTAATTTGCATAAATATCGATC

Fln Alignment:

sp_v1.1_unigene34304___FFLHKDRDTAMRIWDGSGWEGKLGFRNLQNRCLVEVNDNNQITMHDHLRDMGRDLAQKEPPDCWRRIWRPTDNLLY
D5ADI3_______________FFIGEDCDTAVRIWDGSGWNGLLGLRKLQNRCLMEVDSENRIRMHNDLRDLGRDIGEKEPP---HRLWLSTDSLLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain