SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34253

Length: 249 nt

UniGene Fasta

>sp_v1.1_unigene34253
CGTCGTGACCTTGGCTGTCACTCAGGGTTTGACCCAAACACACGACACTGCTTATATGGTTTGGATGCTGATTTGATTATGTTGGCTTTGGCAACTCATGAGGTTCACTTTTCAATTTTAAGAGAGGTTGTCTTCACACCTGGGCAACAAGACAAATGCTTCTTGTGTGGCCAGATTGGCCACCTGGCAGCCGAATGTGAAGGAAAAGCCAAGCAAAAACATGGAGAGTTTGATGAGAAGGGCGGGGAA

Ace file of the UniGene sp_v1.1_unigene34253

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	5'->3' exoribonuclease, putative n=1 Tax=Ricinus communis RepID=B9R871_RICCO	-	-	3.0e-35	89%
FL-Next	Isoform 2 of 5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3	-	-	0.0	82%
Blast2go	5 -3 exoribonuclease 2	-	-	5.99363e-35	93%

Source	GOs	Term	Type	e value	Identity
Blast2go	miRNA catabolic process	GO:0010587	Biological Process	5.99363e-35	93%
Blast2go	5'-3' exoribonuclease activity	GO:0004534	Molecular Function	5.99363e-35	93%
Blast2go	nucleus	GO:0005634	Cellular Component	5.99363e-35	93%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, CCHC-type	IPR001878	-	5.99363e-35	93%
Blast2go	Putative 5-3 exonuclease	IPR004859	-	5.99363e-35	93%
Blast2go	Zinc finger, CCHC retroviral-type	IPR013084	-	5.99363e-35	93%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FQ03-2

Fln msg: Distance to subject end: 469 aas, your sequence is shorter than subject: 83 - 763

Fln protein: RRDLGCHSGFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQIGHLAAECEGKAKQKHGEFDEKGGE

Protein Length: 84

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGGTTTGACCCAAACACACGACACTGCTTATATGGTTTGGATGCTGATTTGATTATGTTGGCTTTGGCAACTCATGAGGTTCACTTTTCAATTTTAAGAGAGGTTGTCTTCACACCTGGGCAACAAGACAAATGCTTCTTGTGTGGCCAGATTGGCCACCTGGCAGCCGAATGTGAAGGAAAAGCCAAGCAAAAACATGGAGAGTTTGATGAGAAGGGCGGGGAA

Fln Alignment:

sp_v1.1_unigene34253___GFDPNTRHCLYGLDADLIMLALATHEVHFSILREVVFTPGQQDKCFLCGQIGHLAAECEGKAKQKHGEFDEKG
Q9FQ03-2_____________GFDPNTRHCLYGLDADLIMLGLATHEVHFSILREVVYTPGQQERCFLCGQMGHFASNCEGKPKKRAGESDEKG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain