SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34228

Length: 482 nt

UniGene Fasta

>sp_v1.1_unigene34228
ATGGGGCCTTTTTTCTAATCGTAGGAGCTGTTGTATGGATTCTAGAGCATAGAATAAACCATGAGTTTCGTGGGCATCCAAAGCGGCAAGTTAGTAATGTTCTCTGGTTTTCTTTCTCAACGATGTTCTTTTCACAGAAGGAAAACACTAAAAGCACCCTTGGACGAGCAGTGCTCATCATATGGCTATTCGTGGTCTTAATCATCAGTCAAAGTTACACTGCAAGTCTTACATCAATCCTCACAGTGCAGCAGCTTTCAACAACAATTCAAGGAATCGATGGCTTAGTTTCAAGCAATTTCCCAATAGGATATCAAACAGGATCATTTGTTCAAAACTATTTATCAGAAACGTTCAATATAGCCAAATCCAGACTAGTTCCTTTGGATTCAATCGAGCATTATGCTAGAGCATTATCCCTGGGACCAAACAGACCAGGAGGCGTAGCAGCAATTGTGGACGAGTATCCCTATATTCAATTG

Ace file of the UniGene sp_v1.1_unigene34228

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Glutamate-gated kainate-type ion channel receptor subunit GluR5 n=1 Tax=Populus trichocarpa RepID=B9GU66_POPTR	-	-	65%
FL-Next	sp=Glutamate receptor 3.1; Oryza sativa subsp. japonica (Rice).	-	-	65%
Blast2go	glutamate-gated kainate-type ion channel receptor subunit 5	-	-	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Ionotropic glutamate receptor	IPR001320	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q7XP59

Fln msg: Distance to subject end: 184 aas, your sequence is shorter than subject: 160 - 938

Fln protein: GAFFLIVGAVVWILEHRINHEFRGHPKRQVSNVLWFSFSTMFFSQKENTKSTLGRAVLIIWLFVVLIISQSYTASLTSILTVQQLSTTIQGIDGLVSSNFPIGYQTGSFVQNYLSETFNIAKSRLVPLDSIEHYARALSLGPNRPGGVAAIVDEYPYIQL

Protein Length: 161

Fln nts: ATGGGGCCTTTTTTCTAATCGTAGGAGCTGTTGTATGGATTCTAGAGCATAGAATAAACCATGAGTTTCGTGGGCATCCAAAGCGGCAAGTTAGTAATGTTCTCTGGTTTTCTTTCTCAACGATGTTCTTTTCACAGAAGGAAAACACTAAAAGCACCCTTGGACGAGCAGTGCTCATCATATGGCTATTCGTGGTCTTAATCATCAGTCAAAGTTACACTGCAAGTCTTACATCAATCCTCACAGTGCAGCAGCTTTCAACAACAATTCAAGGAATCGATGGCTTAGTTTCAAGCAATTTCCCAATAGGATATCAAACAGGATCATTTGTTCAAAACTATTTATCAGAAACGTTCAATATAGCCAAATCCAGACTAGTTCCTTTGGATTCAATCGAGCATTATGCTAGAGCATTATCCCTGGGACCAAACAGACCAGGAGGCGTAGCAGCAATTGTGGACGAGTATCCCTATATTCAATTG

Fln Alignment:

sp_v1.1_unigene34228___GAFFLIVGAVVWILEHRINHEFRGHPKRQVSNVLWFSFSTMFFSQKENTKSTLGRAXXXXXXXXXXXXSQSYTASLTSILTVQQLSTTIQGIDGLVSSNFPIGYQTGSFVQNYLSETFNIAKSRLVPLDSIEHYARALSLGPNRPGGVAAIVDEYPYIQL
Q7XP59_______________GLFFLIIGTVVWMLEHRINDEFRGPPAKQLITVFWFSFSTLFFAHREDTRSTLGRFVIIIWLFVVLIIQSSYTASLTSILTVQQLTSPITGIDSLITSDVPIGFQVGSFAENYLAQELGVAHSRLKALGSPEEYKKALDLGPSK-GGVAAIVDERPYIEL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain