SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34207

Length: 1654 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene34207

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cytochrome C1, putative; K00413 ubiquinol-cytochrome c reductase cytochrome c1 subunit [EC:1.10.2.2]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	cytochrome c1 precursor	-	-	92%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ubiquinol--cytochrome-c reductase.	EC:1.10.2.2	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
AutoFact	Oxidative phosphorylation	00190		0.0	83%
AutoFact	Metabolic pathways	01100		0.0	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	92%
Blast2go	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Blast2go	Cytochrome c1	IPR002326	-	92%
Blast2go	Cytochrome c domain	IPR009056	-	92%
Blast2go	Cytochrome c1, transmembrane anchor, C-terminal	IPR021157	-	92%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NMY7

Fln msg:

Fln protein: MWGALRQKCGLTTLVSSLNHAQTSEKLVSMASTPLINSYTAAKEDAAAFTSKQNQKGGDSVGMKSLKALVLLGAGVSGLFGFAGIAAADEAEHGLECPSYPWPHKGILSSYDHASIRRGHQVFQQVCASCHSMSLVTYRDLVGVAYTEEEAKALAAEIEVEDGPNDEGEMFTRPGKLSDRFPKPYANEQAARFANGGAYPRDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFTGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVTFLSWAAEPEMEERKLMGFKWIFIFSLALLQAGFYRRWKWAPVKSRKMILDVVN*

Protein Length: 333

Fln nts: ATGTGGGACTGTGGGGGGTTCTAAAAACATGCCAAAAGGGGCTGCAAGGCATGACCCAGACTTCCTTCGGCCCTAGGGTTTTGTGGGGTATGATCAAGTGTTTGGTTGGCGAGGAACAAAGTCTTTTTTGGATCGTTTTGGGAGCGCCGTCCCTCCCGCATTGGATGCAAATCTGCCATTAACGTCCTTCCTCAATCTTGTCAGCTAAACTCCAAGGAAAGAAA_-_ATGTGGGGTGCTTTGCGGCAAAAATGTGGCTTGACAACTCTAGTGTCTTCATTGAATCATGCTCAAACTTCGGAGAAGTTGGTGTCTATGGCATCCACACCCTTAATAAATTCATACACTGCTGCTAAAGAGGATGCTGCGGCATTTACTTCCAAGCAAAATCAGAAGGGAGGGGACTCTGTTGGCATGAAGTCACTAAAGGCTTTGGTACTTCTTGGGGCAGGGGTGTCTGGCTTATTTGGATTTGCAGGTATCGCAGCTGCGGATGAGGCAGAACATGGCTTAGAGTGCCCAAGCTACCCGTGGCCCCATAAGGGAATTCTAAGTTCCTATGATCATGCATCAATTCGGCGTGGACATCAGGTCTTTCAACAAGTTTGCGCATCTTGCCATAGTATGTCGTTGGTCACCTACCGTGACCTTGTTGGAGTTGCCTATACTGAAGAAGAAGCAAAAGCTTTAGCAGCAGAAATAGAAGTCGAGGATGGACCAAATGATGAAGGTGAAATGTTTACACGACCTGGAAAACTAAGTGATCGTTTTCCTAAGCCTTATGCTAATGAACAGGCGGCAAGATTTGCCAATGGAGGGGCCTATCcTCgtGACCTTAGCCTGATTACAAAGGCACGCCATAATGGTCAGAACTATGTATTTTCCTTGCTTACTGGATACCGTGATCCGCCAGCTGGGGTTTCGATTCGAGAGGGATTGCATTATAATCCTTATTTCACCGGCGGTGCAATAGCCATGCCCAAAATGCTTAATGATGGTGCGGTTGAGTATGAAGATGGAACACCTGCAACAGAATCTCAGATGGGAAAAGATGTTGTCACGTTCTTGTCCTGGGCAGCTGAGCCCGAAATGGAGGAGCGAAAACTGATGGGGTTCAAATGGATATTTATTTTTTCACTTGCTCTTCTTCAAGCTGGTTTCTATAGGAGATGGAAATGGGCTCCTGTTAAATCACGTAAAATGATTCTCGATGTTGTGAATTAA___CTTAGTTTTTTGACCTGTATGCTTTGGTGCACTGGAAGGTCCAAAGCGTTATTCTATTTTTAAAGAAAATTTTCTTTTCTCAAATGTAACATGTTATTTGAATTGTCAATAAAGTTCAGAACTAGCATTATGTTTGGTATGGAATATACCACAATGCTATGCGACAATTCTTTGCTTAGAATGTTATTTTTTTATCATTGACTCACATCTTTCTTCAGATTTAAGCTTTGCATTGAGTATTCATGCAATGATGTCAGAAGATGTGGCATGAGGAGGATACGATGATGCCTTCTATGATTTGAAGGGAAAATTGCAATCCCTTTCCAAAATCATGCTCTTTAACCTTTGTTCTCAATTTCTATTTTTGTTAGAAACCGAGTAATTGTTATTTTGCTCTACTCAATTTCAGAGGCATTACAATGGTAATACTGCGT

Fln Alignment:

sp_v1.1_unigene34207___MWGALRQKCGLTTLVSSLNHAQTSEKLVSMASTPLINSYTAAKEDAAAFTSKQNQKGGDSVGMXXXXXXXXXXXXXXXXXXXXXIAAADEAEHGLECPSYPWPHKGILSSYDHASIRRGHQVFQQVCASCHSMSLVTYRDLVGVXXXXXXXXXXXXXXXXXDGPNDEGEMFTRPGKLSDRFPKPYANEQAARFANGGAYPRDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFTGGAIAMPKMLNDGAVEYEDGTPATESQMGKDVVTFLSWAAEPEMEERKLMGFKWIFIFSLALLQAGFYRRWKWAPVKSRKMILDVVN
A9NMY7_______________MWGALRQKCGLTTLVSSLNHAQVSERLVSMASTPLIKSSTAAKEDAAAFTSKQNQNGGDSVGMKSLKALALLGAGVSGLFGFAGIAATDETEHGLDCPSYPWPHKGILSSYDHASIRRGHQVFQQVCASCHSMSLVTYRDLVGVAYTEEEAKALAAEIEVEDGPNDEGEMFSRPGKLSDRFPKPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFSLLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATESQMGKDVVTFLSWAAEPEMEERKLMGFKWIFIFSLALLQAGFYRRWKWAPVKSRKMILDVVN

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
91		33		66	1.0
115			83	16	0.999991
116	83	16			0.999991
950	75		25		0.996473
1083			16	83	0.994512
1235	10			89	0.999919
1236		10		89	0.999919
1237		10	89		0.999919
1241	85	5	10		0.999793
1242	90	10			0.999898
1245	90	10			0.999898
1653	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain