SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34182

Length: 823 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene34182 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	TIR/NBS (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J1_PINTA	-	-	2.0e-37	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	tir nbs lrr disease resistance protein	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Disease resistance protein	IPR000767	-	0.0	59%
Blast2go	NB-ARC	IPR002182	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PQE2

Fln msg: Distance to subject end: 735 aas, your sequence is shorter than subject: 274 - 1071

Fln protein: NELAQMVESESECKSTIIPVFLDVDPSELRWTQSGDGEFAGVQSILRWIFPQSILRWIFPQSIVRWIFPSLQGKNGRYARDLHMLEKKKTLDPNTNKMKPRHDSSTLQKWRNALSVVSNKSGFVIDAYNGDEGQLVDAVVEEVWRKVSKTLLHVAKYPTGLDERIEHVERIVLLQQQSQKTRVVGIVGLGGVGKTTLAKQFFNKHRSNYDRCCFLSDVRETAAKSSLSSLQAALLRDLTHLNEQISNTAEGIGKLQKYLSSRPQCLIVLDDVDH

Protein Length: 275

Fln nts: AACGAGCTCGCGCAAATGGTGGAATCCGAATCCGAATGCAAGTCAACAATTATTCCAGTCTTCCTTGATGTCGATCCTTCCGAACTTCGGTGGACGCAGAGTGGAGATGGAGAGTTCGCTGGAGTCCAGAGTATCCTCCGCTGGATCTTCCCGCAGAGTATTCTCCGCTGGATCTTCCCGCAGAGTATCGTCCGCTGGATCTTCCCGAGTCTACAAGGCAAAAATGGAAGGTATGCTCGAGACCTGCACATGCTAGAAAAGAAGAAAACATTGGATCCTAATACCAACAAAATGAAGCCACGACATGACTCGAGCACTCTGCAAAAATGGAGGAATGCTCTCTCTGTTGTCTCCAATAAAAGCGGTTTTGTTATCGACGCATACAACGGTGACGAAGGGCAGCTAGTTGATGCGGTCGTAGAAGAAGTGTGGCGAAAGGTTAGTAAAACACTTCTTCATGTGGCCAAATATCCTACAGGCCTGGATGAGAGAATAGAACATGTGGAAAGAATTGTGCTCTTGCAGCAGCAAAGCCAGAAGACTAGGGTTGTGGGAATTGTGGGTCTTGGCGGGGTAGGCAAAACGACCCTTGCAAAACAATTCTTCAACAAACACAGATCAAATTATGATCGATGTTGTTTTCTGTCTGATGTGAGAGAAACCGCAGCTAAGAGCTCTTTAAGTTCATTGCAGGCAGCACTTCTTAGAGACTTGACTCATTTGAACGAGCAAATAAGCAACACTGCTGAAGGCATAGGGAAGCTCCAAAAGTATCTTTCATCCCGTCCCCAGTGTCTGATAGTCTTAGATGATGTTGATCATA

Fln Alignment:

sp_v1.1_unigene34182___NELAQMVESESECKSTIIPVFLDVDPSELRWTQSGDGEFAGVQSILRWIFPQSILRWIFPQSIVRWIFPSLQGKNGRYARDLHMLEKKKTLDPNTNKMKPRHDSSTLQKWRNALSVVSNKSGFVIDAYNGDEGQLVDAVVEEVWRKVSKT--LLHVAKYPTGLDERIEHVERIVLLQQQSQKTRXXXXXXXXXXGKTTLAKQFFNKHRSNYDRCCFLSDVRETXXXXXXXXXXXXXLRDLTHLNEQISNTAEGIGKLQKYLSSRPQCLIVLDDVD
C0PQE2_______________DELLDMLDTVKS-GSAILPVFYNVQPSDLRWTRGGDTVYARVLSIFLCILLCT------------------RGENGVYARALRKLQKKTTLDSVTNKKKPRHDSDTIEKWRKALSDVSLISGFELNACNGDERQLVDKVVQRVLEKVPKVHPPLNVAKYPSGLDEKIQDVDRILSLQQQRKKARVVGIVGLGGIGKTTLAKKIYNREKSNYKRICLLRDVRSS----NLHSLQSRLLKELNQSSAQINDIDEGIEKLKTY---SERALIVLDDVD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain