SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene34107

Length: 1012 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene34107 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) n=1 Tax=Vitis vinifera RepID=D7U593_VITVI	-	-	5.0e-34	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Blast2go	proline-rich family protein	-	-	9.92363e-35	65%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
181	28	71			1.0
419		8		91	0.999766
420		8	91		0.999766
422			91	8	0.999766
731	12		75		0.975346
733	12		87		0.992556
734			87	12	0.992558
735	12	87			0.992556
737	14	85			0.993538
738			85	14	0.993539
744			83	16	0.994512
746		14	85		0.993541
748			80	20	0.995505
749		20	80		0.995505
751		33	66		0.997452
753	66			33	0.997476
754	66			33	0.997476
755	66			33	0.997476
756	66			33	0.997476
757	66	33			0.997461
759	33		66		0.997467
760			66	33	0.997476
763			33	66	0.999998
764	33	66			0.999999
766			60	40	1.0
767	75		25		0.996474
768	75			25	0.996473
769	80		20		0.995493
770	80			20	0.995493
771			20	80	0.995493
776	80		20		0.995493
781	14		85		0.993533
786	85	14			0.993533
788			14	85	0.993533
1017	11			88	0.923667
1020	33	66			1.0
1021	33		16	50	1.0
1023	75	25			0.996481
1024	33		66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain