SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33949

Length: 1456 nt

Origin of reads: Biogeco_1 Biogeco_2 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene33949 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phenylcoumaran benzylic ether reductase n=1 Tax=Pinus strobus RepID=Q1HFH6_PINST	-	-	92%
FL-Next	tr=Phenylcoumaran benzylic ether reductase; Pinus strobus (Eastern white pine).	-	-	92%
Blast2go	phenylcoumaran benzylic ether reductase	-	-	89%

Source	InterPros	Term	Type	e value	Identity
Blast2go	NmrA-like	IPR008030	-	0.0	89%
Blast2go	NAD(P)-binding domain	IPR016040	-	0.0	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q1HFH6

Fln msg:

Fln protein: MGSISRILIIGATGYIGRHVAKASVALGHPTFLLVRDSPASDKPERAQLLDSFKSSGANILNGSLEDHASLVEALKKVDVVISTVGGEQTANQLNIIQAIKEVGTIKRFLPSEFGNDVDNVHAVEPAKSAFEMKVKIRRAIEAAGIPYTYVSSNFFAGYFLPTLSQAGLTAPPRDKVVIFGDGNVKAVYVKEEDIGTYTIRAVDDPRTLNKTLYLRLPANTLSFNELVAIWEKKIGKTLEKVYVPEEQVLKIIEESPFPANIVIAISHSVFVKGDQTNFEIGPNGVEGSQLYPDVKYTTVDEYLNQFV*

Protein Length: 310

Fln nts: TACTATGGGGCTCTCTGTATCGATCATATTCCCCACTGCATTTGTCGTTATCTTGTTGCAGAACAGTTAGAATTTGAAAGTAGAC_-_ATGGGAAGCATCAGCCGAATTTTGATAATTGGAGCAACAGGCTACATTGGTCGTCATGTCGCCAAGGCCAGCGTTGCTCTTGGCCACCCCACCTTCCTTCTCGTCCGAGACTCACCGGCTTCTGATAAGCCAGAGAGAGCCCAGCTCCTGGACTCTTTCAAGTCTTCAGGAGCTAACATACTCAATGGATCATTAGAGGATCATGCAAGCCTTGTGGAGGCATTGAAGAAGGTGGATGTGGTAATCTCCACAGTAGGAGGAGAACAGACAGCCAATCAGTTGAATATTATCCAAGCTATTAAAGAAGTTGGAACCATCAAGAGGTTTTTGCCATCTGAGTTTGGGAATGATGTTGATAACGTCCATGCAGTGGAGCCTGCCAAGAGTGCGTTTGAGATGAAAGTCAAAATCCGTAGGGCAATCGAGGCAGCGGGCATCCCTTATACATATGTCTCCAGCAACTTTTTTGCTGGTTATTTCCTTCCTACACTGTCACAGGCTGGCCTTACAGCTCCTCCAAGGGATAAAGTAGTCATTTTTGGAGATGGAAATGTTAAAGCTGTGTATGTGAAGGAGGAAGACATTGGAACATACACAATCAGGGCAGTGGACGATCCCAGAACTCTGAACAAAACCTTATACTTGAGACTTCCTGCAAACACTCTGTCTTTCAATGAACTTGTGGCTATATGGGAAAAGAAGATCGGAAAGACTCTAGAGAAGGTCTATGTCCCTGAGGAGCAGGTTCTCAAAATAATTGAAGAGTCACCATTCCCAGCTAATATTGTCATAGCAATCAGTCACTCTGTTTTTGTGAAAGGGGATCAAACAAATTTTGAAATTGGACCTAATGGAGTGGAGGGCAGTCAGCTGTACCCTGATGTGAAATACACCACTGTCGATGAGTACCTTAACCAATTTGTGTGA___GTATTCGAGGTTGGCTTCAACAGACTGAGATTAGATAGCGGTTTTCAACAGATCGAGATAGTATAGCAGTTCAATAAAAGTTTGTCCTGCTTTTGCCCAGTTATATAGGCTATGAAAACAGAGCTTCTTATATGGTTTGGTAAGATCAGAAAACTTCTTGTATGGTTGTGTAAGGTCAGAAGTAGGCACAGGCAGATCCTTAACATATTTGTGCTCCATAATAAGCAAGCAAATGGCGTTTTGTTTGTTTTATTTTTGGACCTTTGGCGTGATATATTGTCTTTTGAAGCTGCACATTTTGGATTACTAAATACTTTGTCAAATAGTTATAAGAAAGTGGCAAATCCATGGATGAAGTCAGATACTTTTATCTTTATACAGTTATTATTAGCTAACTGGTATTTTAATGAATAATTTAGAAGAATGTTGACAGATTTATATTAG

Fln Alignment:

sp_v1.1_unigene33949___MGSISRILIIGATGYIGRHVAKASVALGHPTFLLVRDSPASDKPERAQLLDSFKSSGANILNGSLEDHASLVEALKKVDVVISTVGGEQTANQLNIIQAIKEVGTIKRFLPSEFGNDVDNVHAVEPAKSAFEMKVKIRRAIEAAGIPYTYVSSNFFAGYFLPTLSQAGLTAPPRDKVVIFGDGNVKAVYVKEEDIGTYTIRAVDDPRTLNKTLYLRLPANTLSFNELVAIWEKKIGKTLEKVYVPEEQVLKIIEESPFPANIVIAISHSVFVKGDQTNFEIGPNGVEGSQLYPDVKYTTVDEYLNQFV
Q1HFH6_______________MGSRGRILIIGATGYIGRHVAKASVALGHPTYLLVRDSPASAKPERAQLLDSFKASGANILNGSLEDHASLVEAVKKVDVVISTVGGEQTANQINIIQAIKEVGTIKRFLPSEFGNDVDNVHAVEPAKSAFEQKVKIRRAIEAAGIPYTYVASNFFAGYFLPTLSQAGLTAPPRDKVVIFGDGNAKAVFVKEEDIGIYAIRAVDDPRTLNKTLYLRPAANTLSFNELVALWEKKIGKTLEKVYVPEEQVLKIIEETPFPGNIIIAISHSTFVKGDHTNFEIGANGVEGSQLYPDVKYTTVDEFLNAFV

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
264		80		20	0.995493
284	80		20		0.995493
384	85		14		0.993533
407	11			88	0.991528
440	11		88		0.991528
605	23			76	1.0
728	72	27			1.0
737		72		27	1.0
749		25		75	1.0
825			18	81	0.999994
826		20		80	0.999999
828	77			22	0.999999
829		77		22	0.999999
830	77		22		0.999999
832	22			77	0.999999
837	11		11	77	0.968132
838		75	12		0.975346
896	80	20			0.995493
1139	11			88	0.991528
1177		11	88		0.991528
1375	18		81		0.999994
1408	18	81			0.999994
1430	25		75		1.0
1446	71	28			1.0
1447		28		71	1.0
1449		28	71		1.0
1452	80	20			0.995494
1454	80	20			0.995494
1455		20	80		0.995494

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain