SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33937

Length: 443 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene33937
CGTCGTGACCTTGACTGAAGTTACAATTCCAATAGCTGCAGTCCATCATGACAAAGAGCTGTGGGGACAAGATGCTAACGAGTTCAACCCACAAAGATTTTGTGAGGGAGTTTCCAAGGCCGTTAAGCATCCGATGGCGTTTATGCCTTTCGGGTTAGGGCCCAGAATCTGCGTGGGTATGAATTTCTCCATGGTTGAAGCCAAGGTGGTTTTGGCTATGTTGTTACAACGGTTCTCTTTTGTACTTTCGCCTGCGTATACCCATGCGCCTGCTCAAAATTTTACAATTCGTCCACAACACGGAGCGCAGCTGGTTATGCATAAAAGAAGATTTGTGGGAATTTAAATGAAAAGATGCCGCGAGCCCTCCGATCTTCTGGCCAATCTCTGTGAATATGTGCTTTCATGTAAAAGAAATCCCAGGAAAAAAAGGTAATTTTATT

Ace file of the UniGene sp_v1.1_unigene33937

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[Q] COG2124 Cytochrome P450	-	-	2.0e-14	36%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	cytochrome p450	-	-	6.36365e-40	79%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Cytochrome P450	IPR001128	-	6.36365e-40	79%
Blast2go	Cytochrome P450, E-class, group I	IPR002401	-	6.36365e-40	79%
Blast2go	Cytochrome P450, conserved site	IPR017972	-	6.36365e-40	79%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWW9

Fln msg: your sequence is shorter than subject: 115 - 517

Fln protein: VVTLTEVTIPIAAVHHDKELWGQDANEFNPQRFCEGVSKAVKHPMAFMPFGLGPRICVGMNFSMVEAKVVLAMLLQRFSFVLSPAYTHAPAQNFTIRPQHGAQLVMHKRRFVGI*

Protein Length: 116

Fln nts: CGTCGTGACCTTGACTGAAGTTACAATTCCAATAGCTGCAGTCCATCATGACAAAGAGCTGTGGGGACAAGATGCTAACGAGTTCAACCCACAAAGATTTTGTGAGGGAGTTTCCAAGGCCGTTAAGCATCCGATGGCGTTTATGCCTTTCGGGTTAGGGCCCAGAATCTGCGTGGGTATGAATTTCTCCATGGTTGAAGCCAAGGTGGTTTTGGCTATGTTGTTACAACGGTTCTCTTTTGTACTTTCGCCTGCGTATACCCATGCGCCTGCTCAAAATTTTACAATTCGTCCACAACACGGAGCGCAGCTGGTTATGCATAAAAGAAGATTTGTGGGAATTTAA___ATGAAAAGATGCCGCGAGCCCTCCGATCTTCTGGCCAATCTCTGTGAATATGTGCTTTCATGTAAAAGAAATCCCAGGAAAAAAAGGTAATTTTATT

Fln Alignment:

sp_v1.1_unigene33937___TEVTIPIAAVHHDKELWGQDANEFNPQRFCEGVSKAVKHPMAFMPFGLGPRICVGMNFSMVEAKVVLAMLLQRFSFVLSPAYTHAPAQNFTIRPQHGAQLVMH
A9NWW9_______________TQLLLPILAIHHDQCLWGNDANEFNPARFSEGIAKAVKHPLAFMPFGFGPRICVGQNFALLEAKVVLAMILQRFSFVTSPSYAHAPVMVVTVRPQHGAQVILH

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
111	16		83		0.994512
113			16	83	0.994512
114			16	83	0.994512
115		83	16		0.994512
124			50	50	1.0
128	50		50		1.0
133		83	16		0.994519
152		83		16	0.994516
155	50		50		1.0
161	50		50		1.0
164	50	50			1.0
174	50		50		1.0
195	50		50		1.0
197		50		50	1.0
208		33		66	0.997458
269		33	66		0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain