SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33788

Length: 377 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene33788
CGTCGTGACCTTGGCTGTCACTCGTTTTTTGGTTGTCATTGCGGTGGGTTCTGCGGGGACAAAGCCGTCTGCCATGGCCTTCGGAGCGGATCAGTTCGATCGGGGTGGAGAGAGAGAGAAAAGACGGTTGCAGAGCTACTTCAACTGGTATTACTTCGCAGGCCGCGTGGCTATTATAATTGCCCTCACTGTTGTCGTCTATATTCAAAGCGATGTTAGCTGGGGTTTCGGCTTCAGCCTCTGTACTGCTTCCATGCTCATGTCCTCCATCTTCTTCCTTCTGGGCGCGCCAAATTATCGGTATGAAGTTCCACAGGGCAGCGCTCTCGCAGGGTTCGCGCAGGTTATCGTGGCCTCGGTCAAGAAGCGCAATTTAC

Ace file of the UniGene sp_v1.1_unigene33788

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptide transporter, putative	-	-	5.0e-24	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	protein	-	-	8.54869e-37	67%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Oligopeptide transporter	IPR000109	-	8.54869e-37	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AA65

Fln msg: Distance to subject end: 324 aas, your sequence is shorter than subject: 125 - 629

Fln protein: VVTLAVTRFLVVIAVGSAGTKPSAMAFGADQFDRGGEREKRRLQSYFNWYYFAGRVAIIIALTVVVYIQSDVSWGFGFSLCTASMLMSSIFFLLGAPNYRYEVPQGSALAGFAQVIVASVKKRNL

Protein Length: 126

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTTTTTTGGTTGTCATTGCGGTGGGTTCTGCGGGGACAAAGCCGTCTGCCATGGCCTTCGGAGCGGATCAGTTCGATCGGGGTGGAGAGAGAGAGAAAAGACGGTTGCAGAGCTACTTCAACTGGTATTACTTCGCAGGCCGCGTGGCTATTATAATTGCCCTCACTGTTGTCGTCTATATTCAAAGCGATGTTAGCTGGGGTTTCGGCTTCAGCCTCTGTACTGCTTCCATGCTCATGTCCTCCATCTTCTTCCTTCTGGGCGCGCCAAATTATCGGTATGAAGTTCCACAGGGCAGCGCTCTCGCAGGGTTCGCGCAGGTTATCGTGGCCTCGGTCAAGAAGCGCAATTTAC

Fln Alignment:

sp_v1.1_unigene33788___VGSAGTKPSAMAFGADQFDRGGEREKRRLQSYFNWYYFAGRVAIIIALTVVVYIQSDVSWGFGFSLCTASMLMSSIFFLLGAPNYRYEVPQGSALAGFAQVIVASVKKRNL
D5AA65_______________VGSAGVRPSNMAFGADQLEQEGAKGKRRVQSFFNWYYFSSCVALIISLTVIVYIQTNVSWGIGFGICIVFMLISIVFFLLGRPVYRHDVPRGSAFTGFAQVIVASIRKRSL

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain