SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33670

Length: 888 nt

Origin of reads: Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene33670

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	multidrug resistance protein ABC transporter family	-	-	64%
FL-Next	sp=ABC transporter C family member 10; Arabidopsis thaliana (Mouse-ear cress).	-	-	59%
Blast2go	multidrug resistance protein abc transporter family	-	-	80%

Source	InterPros	Term	Type	Identity
Blast2go	ABC transporter, transmembrane domain	IPR001140	-	80%
Blast2go	ABC transporter, transmembrane domain, type 1	IPR011527	-	80%
Blast2go	ABC transporter, integral membrane type 1	IPR017940	-	80%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LYS2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 255 aas, your sequence is shorter than subject: 273 - 1389

Fln protein: VVTLAVTQNIWMAAKVQSPRVSVLSLITVYSAIGFTSILFLFLRSLFCVILGLEASKSFFSELLSSLFRAPMAFFDATPLGRVLSRVSSDFSILDVDIPFSFVFAMSSTMNAYSSLGVVAVVTWQALFVAIPMIYLTLQLQKYYFASAKELMRLNGTTKSPIANHFGESIAGTMTIRAFKVEDQFLKKNLDLIDKNSNPFFYSFSANEWLIQRLEMLSATVLCSSALAMVLLPKDSFNPGFVGMALSYGLSLNISLVSVFKTNVHLQTTLFL*

Protein Length: 274

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAATATTTGGATGGCTGCAAAGGTGCAAAGTCCTCgAGTCAGTGTATTAAGTTTAATAACAGTGTACTCAGCCATTGGGTTCACATCTATATTGTTCTTATTcCTTCGGTCATTGtTTTGTGTTATTTTGGGGCTTGAGGCATCAAAGTCCTTCTTTTCTGAGCTTCTGAGTTCTTTATTCCGAGCACCAATGGCATTCTTTGATGCAACTCCATTGGGAAGAGTTCTGAGCAGAGTTTCTTCAGATTTCAGCATTCTCGATGTAGACATTCCTTTCTCTTTTGTCTTTGCCATGTCGTCTACCATGAATGCTTATAGCAGTCTTGGAGTTGTGGCTGTTGTAACATGGCAAGCTTTGTTTGTtGCCATTCCAATGATTTATTTGACCcTTCAACTCCAGAAATACTATTTTGCCTCTGCTAAAGAACTGATGAGACTGAATGGTACAACGAAATCACCTATTGCAAATCATTTTGGCGAGTCCATAGCAGGAACAATGACCATTAGGGCTTTCAAGGTTGAGGATCAGTTCTTGAAGAAGAACTTAGACCTTATTGATAAAAATTCGAaCCCCTTTTTCTACAGTTTCTCGGCAAATGAATGGTTGATTCAGCGTCTAGAGATGTTAAGTGCAACTGTTCTTTGCTCATCTGCTCTTGCTATGGTTCTACTCCCGAAGGACAGCTTCAATCCTGGTTTTGTTGGGATGGCACTATCATATGGTCTGTCATTGAACATATCATTGGTTTCAGTATTCAAAACCAATGTACACTTGCAAACTACATTGTTTCTGTAGAACGCATCAAACAGTACATGCGCATTCCTAGTGAGGCACCAGCTGTTATGGTAGATTGGAGCCAACAG

Fln Alignment:

sp_v1.1_unigene33670___VTQNIWMAAKVQSPRVSVLSLITVYSAIGFTSILFLFLRSLFCVILGLEAXXXXXXXXXXXXXRAPMAFFDATPLGRVLSRVSSDFSILDVDIPFSFVFAMSSTMNAYSSLGVVAVVTWQALFVAIPMIYLTLQLQKYYFASAKELMRLNGTTKSPIANHFGESIAGTMTIRAFKVEDQFLKKNLDLIDKNSNPFFYSFSANEWLIQRLEMLSATVLCSSALAMVLLPKDSFNPGFVGMALSYGLSLNISLVSVFKTNVHL
Q9LYS2_______________ILQNSWMAANVDNPQVSTLKLILVYLLIGLCSVLCLMVRSVCVVIMCMKSSASLFSQLLNSLFRAPMSFYDSTPLGRILSRVSSDLSIVDLDVPFGLIFVVASSVNTGCSLGVLAIVTWQVLFVSVPMVYLAFRLQKYYFQTAKELMRINGTTRSYVANHLAESVAGAITIRAFDEEERFFKKSLTLIDTNASPFFHSFAANEWLIQRLETVSAIVLASTAFCMILLPTGTFSSGFIGMALSYGLSLNMGLVYSVQNQCYL

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
275	12			87	0.992554
327			50	50	1.0
382		50		50	1.0
392	42			57	1.0
417		44		55	1.0
425	30	70			1.0
441			88	11	0.991528
551	20		80		0.995493
598	40		60		1.0
777			33	33	0.997649
778			33	66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain