SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33609

Length: 1165 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene33609

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein phosphatase 2c, putative (EC:3.1.3.16)	-	-	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein phosphatase	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein phosphatase 2C-like	IPR001932	-	0.0	78%
Blast2go	Protein phosphatase 2C	IPR015655	-	0.0	78%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LKN4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 279 - 449

Fln protein: FQIHH*AAVKIS*ILGLYY*GVCSLIHYH*FCLYVSFIQAFFGVFDGHSGRAAADFAAENLGQNIVDAVVSMGDEKEDNVEQAARAGYLTTDAEFLKQEVGSGTACVTALIIDGNLVVSNAGDCRAVLSRDGVSEALTCDHRAGREDERQRIEDLGGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWITAEPDSRKIEVTSDCEFLILASDGLWDKVSNQEAVEIARPFCIDRQPNLKPVGAGPIDACKKLVELAVTRKSQDDVSVMIIQLRHFCKKED*

Protein Length: 280

Fln nts: ATTCCAGATACATCACTAAGCAGCAGTTAAAATAAGTTAGATTTTGGGATTGTACTATTAGGGTGTTTGTAGCTTGATTCATTATCACTGATTCTGTCTTTATGTTTCCTTCATTCAGGCCTTCTTTGGTGTCTTCGATGGTCATAGTGGTCGTGCAGCTGCAGATTTCGCTGCAGAAAATCTCGGGCAGAATATTGTGGATGCTGTGGTCAGCATGGGAGATGAAAAAGAGGACAATGTTGAGCAGGCTGCTAGAGCAGGATACTTAACAACAGATGCAGAGTTTTTAAAGCAGGAAGTTGGCAGCGGTACTGCTTGCGTTACTGCTCTGATTATAGATGGTAACTTGGTGGTTTCCAATGCGGGGGATTGTCGAGCAGTTCTTAGCAGAGATGGTGTTTCTGAAGCCCTTACCTGTGATCATCGAGCTGGAAGGGAGGATGAGCGACAACGGATAGAGGATTTGGGTGGAATTGTGGATCTCCGCCATGGAGTTTGGCGAGTTCAAGGATCTCTAGCTGTATCTAGGGCAATAGGCGATTCACACATGAAAGAATGGATAACAGCTGAACCTGACTCCAGAAAGATTGAAGTTACATCTGATTGTGAGTTTTTAATTTTGGCATCAGATGGTCTGTGGGATAAAGTCAGTAATCAAGAAGCAGTGGAAATTGCCAGGCCTTTCTGCATCGATAGGCAGCCTAATTTGAAACCAGTAGGAGCTGGCCCTATAGATGCTTGCAAAAAGCTTGTAGAGCTTGCTGTAACCAGAAAATCTCAAGATGATGTCAGTGTGATGATAATACAACTCAGACATTTTTGCAAGAAAGAGGATTAG___ACTGGATGTGCTGAGGGAGGGATGTCATTAAAAGAGTCCTTCACTAACAACCATCTGACCTAGTTTTTTGCAAGAAAGAGGATTAGACTGGATGTGCTGAGGGAGGGATGTCATTAAAAGAGTCCTTCACTAACAACCATCTGACCTAGTTCTGGGTGTTGGCGTTGATCCCACACCCTATATAGGATCCTGATCATTAAGTAGCAAGAAACATGACTCTTCCATTGTTTTATGTAAAATGGGAGACACCTACATTCATTTTTGTACAGTATCACAAATCAATAGGTCCAATGATTCTTTTCCACAATTATTCTTTCATTCAATTCC

Fln Alignment:

sp_v1.1_unigene33609___QAFFGVFDGHSGRAAADFAAENLGQNIVDAVVSMGDEKEDNVEQAARAGYLTTDAEFLKQEVGSGTACVTALIIDGNLVVSNAGDCRAVLSRDGVSEALTCDHRAGREDERQRIEDLGGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWITAEPDSRKIEVTSDCEFLILASDGLWDKVSNQEAVEIARPFCIDRQPNLKPVGAGPIDACKKLVELAVTRKSQDDVSVMIIQLRHFCKKED
B8LKN4_______________QAFFGVFDGHSGRMAADFAAENMGQNIVDAMLSMGDEKEDIVEQAVRAGYLTTDAEFLKQEVGSGTACVTALIIDGNLVVSNAGDCRAVISRDGASEALTCDHRAGREDERQRIENLGGIVDLRHGVWRVQGSLAVSRAIGDSHMKEWIIAEPDTRKIEITSDCEFLILASDGLWDKVSNQEAVDIARPFCVEKQPNLKPLQGGPIDACKKLVELAVTRKSQDDVSVMIVQLGHFCMKKN

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
330		33		66	1.0
348		71	28		1.0
438			88	11	0.991528
441	88		11		0.991528
451	81			18	0.999994
550		22		77	0.999999
568	16		83		0.994512
621	16		83		0.994512
624	33			66	0.997452
625			33	66	0.997452
782		88	12		1.0
919		25		75	0.996486
921			25	75	0.996474
923			33	66	0.997458
925		66		33	0.997452
926	66		33		0.997452
927	66			33	0.997452
928			66	33	0.997452
929	66		33		0.997452
930	66		33		0.997452
931	66	33			0.997452
933	66			33	0.997452
934			66	33	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain