SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33531

Length: 404 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene33531
CGTCGTGACCTTGGCTGTCACTCATCCTGTGGCTACATTGCTCCAGAATATGCCTACACACTTCAAGTCTTTGAGAAAAGTGACATATACAGCTTTGGGGTGGTCCTCTTAGAGCTCTTGACCGGAAGACAGCCAATGGATCCAGAATTTGGAGAAGGTGTCAACATTGTGGACTGGGTCAAGGAAAGAGTTCAGACCAAGGAAGGGATGGAAAAGATCTTAGATCAAAGTGTTAGAGTTCCAAGTTTCTCAGTCAAGGAAGAGATGATGCTGGTCCTCAGAGTGGCTCTCCTCTGCACTAGTAGGTCTCCAGTCAACCGACCATCGATGAGAGATGTTGTTTCAATGTTATCAGAAGCCCACTCCAAAAGCAAAGCAGCCCTTGACACCCAATCCTTGCAACA

Ace file of the UniGene sp_v1.1_unigene33531

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor protein kinase CLAVATA1 precursor, putative (EC:1.3.1.74)	-	-	1.0e-36	63%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	61%
Blast2go	protein	-	-	1.89815e-36	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	transferase activity	GO:0016740	Molecular Function	1.89815e-36	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.89815e-36	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein kinase, catalytic domain	IPR000719	-	1.89815e-36	80%
Blast2go	Protein kinase-like domain	IPR011009	-	1.89815e-36	80%
Blast2go	Serine/threonine-protein kinase-like domain	IPR017442	-	1.89815e-36	80%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: STOP codon was not found. Distance to subject end: 11 aas, your sequence is shorter than subject: 134 - 998

Fln protein: RRDLGCHSSCGYIAPEYAYTLQVFEKSDIYSFGVVLLELLTGRQPMDPEFGEGVNIVDWVKERVQTKEGMEKILDQSVRVPSFSVKEEMMLVLRVALLCTSRSPVNRPSMRDVVSMLSEAHSKSKAALDTQSLQ

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCTGTGGCTACATTGCTCCAGAATATGCCTACACACTTCAAGTCTTTGAGAAAAGTGACATATACAGCTTTGGGGTGGTCCTCTTAGAGCTCTTGACCGGAAGACAGCCAATGGATCCAGAATTTGGAGAAGGTGTCAACATTGTGGACTGGGTCAAGGAAAGAGTTCAGACCAAGGAAGGGATGGAAAAGATCTTAGATCAAAGTGTTAGAGTTCCAAGTTTCTCAGTCAAGGAAGAGATGATGCTGGTCCTCAGAGTGGCTCTCCTCTGCACTAGTAGGTCTCCAGTCAACCGACCATCGATGAGAGATGTTGTTTCAATGTTATCAGAAGCCCACTCCAAAAGCAAAGCAGCCCTTGACACCCAATCCTTGCAACA

Fln Alignment:

sp_v1.1_unigene33531___SCGYIAPEYAYTLQVFEKSDIYSFGVVLLELLTGRQPMDPEFGEGVNIVDWVKERVQTKEGMEKILDQSVRVPSFSVKEEMMLVLRVALLCTSRSPVNRPSMRDVVSMLSEA--HSKSKA
Q19AV8_______________SYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKL-VDCF--KEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANPHHKAKA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain