SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33469

Length: 1485 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene33469

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cell division control protein 50	-	-	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	cell division control protein 50	-	-	78%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Protein of unknown function DUF284, transmembrane eukaryotic	IPR005045	-	0.0	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NU40

Fln msg:

Fln protein: MDGSGPSTSVAAAAAPRTASRRPKNSRFTQQDLPACKPYLTPAWVISLFMLIGIIFIPIGVSCLLASHSVVEILDRYETECIPEEYWSNKLAYIQSDSISKNCTRILRVPKHMKAPIYVYYQLDNFYQNHRRYVKSRSDKELLQGLKTKDIYRQNCVPEGYSNGLRIVPCGLIAWSLFNDTYQFFFESVELNVNKKGISWKSDREHKFGKDIYPYNFQNGTLIGGARLDPLIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLQANDYITVKIQNNYNVYSFGGKKSLVLSTTSWLGGKNDFMGKIYVVTGALCIFLALVFFILHIKVKYPRHYFSSNR*

Protein Length: 341

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTTATTCCCAATGACAACGAAAGCGTTATGAAGGTACGTAAGCGAGCTTTATCATAAATCGCGTTCCCTTGTCTGTCCATTGGTGGTCGCTGACATACATTTTCTGCGCTCCATGAAAAGACTGAAAAATTCGGGTCTGTTTCTTACAAATTATCGCTGTTGTTGCC_-_ATGGACGGTAGCGGCCCCAGCACTTCTGTTGCTGCTGCGGCTGCACCCAGAACAGCATCCCGGAGACCCAAGAATTCGAGGTTCACACAGCAGGATCTTCCTGCTTGTAAACCATATCTGACTCCAGCATGGGTCATCTCATTATTTATGCTGATTGGTATAATCTTCATCCCAATTGGAGTTTCTTGTCTCCTTGCATCTCACAGTGTGGTTGAAATTTTGGATCGATATGAGACTGAATGCATCCCAGAGGAGTACTGGAGTAACAAGTTGGCCTACATTCAAAGTGATTCTATTTCCAAGAATTGCACTAGAATCCTGAGGGTTCCCAAGCATATGAAGGCTCCAATTTATGTATATTACCAACTTGATAACTTCTACCAAAACCACCGACGGTATGTCAAAAGTAGAAGTGACAAAGAGTTGCTGCAGGGGCTGAAGACTAAGGATATATATAGGCAGAATTGTGTACCTGAAGGTTACTCAAATGGACTGCGAATCGTACCATGTGGCCTTATAGCTTGGAGCTTGTTTAATGACACTTACCAGTTTTTTTTTGAGAGTGTTGAACTGAATGTAAATAAGAAAGGCATTTCTTGGAAGAGTGACAGAGAACATAAATTCGGAAAAGATATTTATCCTTACAATTTTCAGAATGGAACATTAATTGGTGGTGCGAGGCTAGATCCATTGATCCCTCTAAGTGAGCAAGAAGACCTTATTGTATGGATGCGCACAGCAGCACTTCCAACATTCAGAAAGTTGTATGGAAAGATTGAGGTGGACCTTCAAGCTAATGACTACATTACAGTGAAGATTCAAAATAACTATAATGTATATAGCTTTGGGGGAAAGAAAAGTTTGGTACTTTCCACCACAAGTTGGCTTGGAGGGAAAAATGATTTCATGGGGAAGATTTACGTTGTCACTGGGGCATTATGCATCTTTTTGGCATTGGTTTTCTTCATTTTGCATATTAAAGTTAAATACCCGAGGCATTATTTCTCATCAAACAGATAA___TGTAATTTGAGTGTCTTGTTATGTAGCTACTGTGAAAACAAGACTCTTAGGCCTTGTATTCTCCAATCCGAGGTGATGGTAGGACATACATCTTTTGTGCTAAGGTTAAAAATTATATAAAGGTCCCATTGCATTGTATGATGGGGTCATATCAGTGCGCCTAAAGGAAAAATACCTTATTGATGAATCTAATGTTGCATGCTTTGTGGAAAGTTTATTTTTGCAATCAGTTACAAATTTTAATTAGTATTACATTGCCAAGGATCTTG

Fln Alignment:

sp_v1.1_unigene33469___MDGSGXXXXXXXXXXXXXXXXXXKNSRFTQQDLPACKPYLTPAWVISLFMLIGIIFIPIGVSCLLASHSVVEILDRYETECIPEEYWSNKLAYIQSDSISKNCTRILRVPKHMKAPIYVYYQLDNFYQNHRRYVKSRSDKELLQGLKTKDIYRQNCVPEGYSNGLRIVPCGLIAWSLFNDTYQFFFESVELNVNKKGISWKSDREHKFGKDIYPYNFQNGTLIGGARLDPLIPLSEQEDLIVWMRTAALPTFRKLYGKIEVDLQANDYITVKIQNNYNVYSFGGKKSLVLSTTSWLGGKNDFMGKIYVVTGALCIFLALVFFILHIKVKYPRH-YFSSNR
A9NU40_______________MDGSGPSTSVAAAAAPRTASRRPKSSKFTQQDIPACRPVLTPAWVISAFMLIGVIFIPIGVFCLLASQSVVEIVDRYETECIPEEYWSNKLAYIQSVSASKNCTRTLRVPKHMKAPIYVYYQLDNFYQNHRRYVKSRSDKEFQQGLKTKDKYRKDCVPEGYSNGLRIVPCGLIAWSLFNDTYKFSFELVELNVNKKNISWKSDREHKFGKDIYPYNFQNGTLIGGARLDPLIPLSKQEDLIVWMRTAALPTFRKLYGRIEVDLQANDFITVEIQNNYNVYSFGGKKSLVLSTTSWLGGKNDFMGKIYIVVGALCIFLAMVFFILHIKFRHPRHLYFSSNR

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
110	50	25		25	0.995595
112		25	25	50	0.995595
113	50		50		1.0
114		25	50		0.995547
115			50	50	1.0
116		50	50		1.0
263	12		87		0.992557
970	86		13		0.999973
1086	81			18	0.999994
1092	90	10			0.90298
1093		10	90		0.90298
1102			90	10	0.90298
1103	90	10			0.90298
1104	10		90		0.90298
1105		10	90		0.90298
1106			90	10	0.90298
1107	88	11			0.923576
1237	62			37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain