SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33434

Length: 525 nt

UniGene Fasta

>sp_v1.1_unigene33434
ATGGGGACCATGATGTGCTGGAGGATCTCCCCCGAGACATGCAGAGCATGAAGAAGCTACAGCGTTTTGTGCTTCAAAATTACCATGGCAGAAGTCTACCCAATTGTATTTGCGAGTTTCCACAATTGGAGAGGTTATATTTGCGGAGATGTTTTCAACTCAGGGATCTTCCTCCCTTGGAGAGGTTGCCAAATTTAAGGTCATTGACATTATTCCGCTGCACTAACTTGAAGGAGCTCGGAATAGGGGCATGGGGAAGTGTGAGGGGATTTCCGATGCTAGAAAGTTTGAAGCTGGAACGCTTATTTATGTTAGAGAGTCTGGCAAGTTCATCAGATGATGTTGTGTGGAATGAACAAAGTCTGCCTAAACTTCAAAGGTTGACCATAAAAGATTGCCCGTCATTGAAGGGATTGCCCCCCGGGATAGACAAGCTACCAGATTTGGGAACCATAGAAGTTGAACAAAATTGGCGGGAAAAGAATGATGTTGAAATTTTCTTAAAAGAAAAATTACATAAAAAAA

Ace file of the UniGene sp_v1.1_unigene33434

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leucine-rich repeat containing protein, putative n=1 Tax=Ricinus communis RepID=B9SHI8_RICCO	-	-	8.0e-10	26%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	59%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Leucine-rich repeat	IPR001611	-	0.0	59%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS43

Fln msg: STOP codon was not found. Distance to subject end: 5 aas, your sequence is shorter than subject: 174 - 932

Fln protein: GDHDVLEDLPRDMQSMKKLQRFVLQNYHGRSLPNCICEFPQLERLYLRRCFQLRDLPPLERLPNLRSLTLFRCTNLKELGIGAWGSVRGFPMLESLKLERLFMLESLASSSDDVVWNEQSLPKLQRLTIKDCPSLKGLPPGIDKLPDLGTIEVEQNWREKNDVEIFLKEKLHKK

Protein Length: 175

Fln nts: ATGGGGACCATGATGTGCTGGAGGATCTCCCCCGAGACATGCAGAGCATGAAGAAGCTACAGCGTTTTGTGCTTCAAAATTACCATGGCAGAAGTCTACCCAATTGTATTTGCGAGTTTCCACAATTGGAGAGGTTATATTTGCGGAGATGTTTTCAACTCAGGGATCTTCCTCCCTTGGAGAGGTTGCCAAATTTAAGGTCATTGACATTATTCCGCTGCACTAACTTGAAGGAGCTCGGAATAGGGGCATGGGGAAGTGTGAGGGGATTTCCGATGCTAGAAAGTTTGAAGCTGGAACGCTTATTTATGTTAGAGAGTCTGGCAAGTTCATCAGATGATGTTGTGTGGAATGAACAAAGTCTGCCTAAACTTCAAAGGTTGACCATAAAAGATTGCCCGTCATTGAAGGGATTGCCCCCCGGGATAGACAAGCTACCAGATTTGGGAACCATAGAAGTTGAACAAAATTGGCGGGAAAAGAATGATGTTGAAATTTTCTTAAAAGAAAAATTACATAAAAAAA

Fln Alignment:

sp_v1.1_unigene33434___DHDVLEDLPRDMQSMKKLQRFVLQNYHGRSLPNCICEFPQLERLYLRRCFQLRDLPPLERLPNLRSLTLFRCTNLKELGIGAWGSVRGFPMLESLKLERLFMLESLASSSDDVVWNEQSLPKLQRLTIKDCPSLKGLPPGIDKLPDLGTIEVEQN-WR----EKNDVEIFLKEKLH
B8LS43_______________DDDVVEDLPQDMQSMKKLHRFLLLNYHGRSLPNCICEFPQLQKLYLYRCFQLGELPPLERLPNLRSLTLDRCINLKELGIGKWGSASGFPMLESLNLIDLPKLESMASSSSNVEWNEQTMPKLQVLSLTDCASLKGLPMGIEKLPNLREIKVQKDRWEELIWEENDVEIFLKEKLH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain