SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33384

Length: 434 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene33384
GAAAAATCCCTTTATGATGTCTGGCTGTAAGGTTGCAAATGGCTATGGTACCATACTGGTAACTGCTGTGGGATTAAATACTGAGTGGGGTTTAGTGATGGCTAGTATATCAAAGGAAAATGAGGAAGAAACTCCCCTACAGGTCCGCCTCAATGGTGTTGCAACTCTTATTGGTAAGGTTGGACTTACAGTGGCAGTTGTAGTCTTTGTCATCCTCTTGATTAGATTCTTACTGGACATACAGAAGATTCCAATGGGAAACCCATGTTTCAAGCGGGAAAGACCAAGGTTGGAGCCACACTTAATGGAATTGTTAACATTTTCTCGATTGCGGTTGTCATCATCGTTGTTGCAGTTCCAGAAGGACTTCCATTGGCAGTCACTCTGACTTTAGCTTATTCAATGAAGAAGATAATGGTTGACAAGGCTTTGGT

Ace file of the UniGene sp_v1.1_unigene33384

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Calcium-transporting ATPase 8, plasma membrane-type n=4 Tax=Arabidopsis RepID=ACA8_ARATH	-	-	1.0e-34	77%
FL-Next	sp=Calcium-transporting ATPase 8, plasma membrane-type; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	77%
Blast2go	cation-transporting atpase	-	-	1.84416e-34	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Calcium-transporting ATPase.	EC:3.6.3.8	-	1.84416e-34	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to nematode	GO:0009624	Biological Process	1.84416e-34	92%
Blast2go	calcium-transporting ATPase activity	GO:0005388	Molecular Function	1.84416e-34	92%
Blast2go	protein self-association	GO:0043621	Molecular Function	1.84416e-34	92%
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.84416e-34	92%

Source	InterPros	Term	Type	e value	Identity
Blast2go	ATPase, P-type, ATPase-associated domain	IPR008250	-	1.84416e-34	92%
Blast2go	ATPase, P-type, transmembrane domain	IPR023298	-	1.84416e-34	92%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LF79

Fln msg: Separated hits, possible frame ERROR between 175 and 232, Distance to subject end: 610 aas, your sequence is shorter than subject: 144 - 1074

Fln protein: KNPFMMSGCKVANGYGTILVTAVGLNTEWGLVMASISKENEEETPLQVRLNGVATLIxxxxxxxxxxxxxxxxxxxxTGHTEDSNGKPMFQAGKTKVGATLNGIVNIFSIAVVIIVVAVPEGLPLAVTLTLAYSMKKIMVDKAL

Protein Length: 145

Fln nts: GAAAAATCCCTTTATGATGTCTGGCTGTAAGGTTGCAAATGGCTATGGTACCATACTGGTAACTGCTGTGGGATTAAATACTGAGTGGGGTTTAGTGATGGCTAGTATATCAAAGGAAAATGAGGAAGAAACTCCCCTACAGGTCCGCCTCAATGGTGTTGCAACTCTTATTGGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTACTGGACATACAGAAGATTCCAATGGGAAACCCATGTTTCAAGCGGGAAAGACCAAGGTTGGAGCCACACTTAATGGAATTGTTAACATTTTCTCGATTGCGGTTGTCATCATCGTTGTTGCAGTTCCAGAAGGACTTCCATTGGCAGTCACTCTGACTTTAGCTTATTCAATGAAGAAGATAATGGTTGACAAGGCTTTGGT

Fln Alignment:

sp_v1.1_unigene33384___KNPFMMSGCKVANGYGTILVTAVGLNTEWGLVMASISKENEEETPLQVRLNGVATLIGxxxxxxxxxxxxxxxxxxxTGHTEDSNGKPMFQAGKTKVGATLNGXXXXXXXXXXXXXXXXPEGLPLAVTLTLAYSMKKIMVDKAL
Q9LF79_______________KDPFLMSGCKVADGNGSMLVTGVGVNTEWGLLMASISEDNGEETPLQVRLNGVATFIGxxxxxxxxxxxxxxxxxxxTGHTKDNNGGPQFVKGKTKVGHVIDDVVKVLTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKAL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain