SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33310

Length: 505 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene33310
CGAGCCGGTGGAGGCGTATGGTTGTGGGGATTGCAGGTGTAGGTGGAATTAGCAAAACGACGCTTGCCAACGAATTCTTCAACTGTAAGAGATCACATTACGATGGCTCGTGCTTTCTACCTGATGTTAGAGAAAAGGCGTCTAGGTCGTTTTTACCTTCTCTGCAGAGTAAGCTTATTAAAGACTTGAAAGGTATAGATAAGGAAATTGATAGATGTGAACAAGGTATAGGAGTGCTTAAAGAGTATCTCAAGTCTTATCGTGCTCTCATAATTATAGACGATGTAGATGATATCGATCAATTGGATGCGTTTTTGCCAATTAAGGGCGTCCTTCATCCCGAGAGCTTGATTTTGGTCACTTCTCGTGACAAGCATGTCCTTCGAAGTGCAGGGATACGAAAGTCATCAATCTATCACCTAAAGGGCCTCAATGAATCACATTCTCAAGAGCTTTTCTGTTCGCATGCTTTCTTTCGGCCACATCCACTACCAGGGTTTGAAAA

Ace file of the UniGene sp_v1.1_unigene33310 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative NBS-LRR protein G8029 (Fragment) n=2 Tax=Pinus monticola RepID=Q6WE85_PINMO	-	-	2.0e-40	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	56%
Blast2go	nbs-lrr protein g8029	-	-	4.39573e-41	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Disease resistance protein	IPR000767	-	4.39573e-41	69%
Blast2go	NB-ARC	IPR002182	-	4.39573e-41	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPT1

Fln msg: Distance to subject end: 40 aas, your sequence is shorter than subject: 167 - 258

Fln protein: SRWRRMVVGIAGVGGISKTTLANEFFNCKRSHYDGSCFLPDVREKASRSFLPSLQSKLIKDLKGIDKEIDRCEQGIGVLKEYLKSYRALIIIDDVDDIDQLDAFLPIKGVLHPESLILVTSRDKHVLRSAGIRKSSIYHLKGLNESHSQELFCSHAFFRPHPLPGFE

Protein Length: 168

Fln nts: CGAGCCGGTGGAGGCGTATGGTTGTGGGGATTGCAGGTGTAGGTGGAATTAGCAAAACGACGCTTGCCAACGAATTCTTCAACTGTAAGAGATCACATTACGATGGCTCGTGCTTTCTACCTGATGTTAGAGAAAAGGCGTCTAGGTCGTTTTTACCTTCTCTGCAGAGTAAGCTTATTAAAGACTTGAAAGGTATAGATAAGGAAATTGATAGATGTGAACAAGGTATAGGAGTGCTTAAAGAGTATCTCAAGTCTTATCGTGCTCTCATAATTATAGACGATGTAGATGATATCGATCAATTGGATGCGTTTTTGCCAATTAAGGGCGTCCTTCATCCCGAGAGCTTGATTTTGGTCACTTCTCGTGACAAGCATGTCCTTCGAAGTGCAGGGATACGAAAGTCATCAATCTATCACCTAAAGGGCCTCAATGAATCACATTCTCAAGAGCTTTTCTGTTCGCATGCTTTCTTTCGGCCACATCCACTACCAGGGTTTGAAAA

Fln Alignment:

sp_v1.1_unigene33310___VVGIAGVGGISKTTLANEFFNCKRSHYDGSCFLPDVREKASRSFLPSLQSKLIKDLKGIDKEIDRCEQGIGVLKEYLKSYRALXXXXXXXXXDQLDAFLPIK-GVLHPESLILVTSRDKHVLRSAGIRKSSIYHLKGLNESHSQELFCSHAFFRPHPLPGFE
B8LPT1_______________LLGIVGLGGVGKTTMAKEFFNRKKTDYNTSCFLSDVRDHAATRSLNLLQSQLHKSLTGMDRNIDSVDQGKGMLMESLKSSKALIILDDVDHVDQVKALLPVQTHDLDSRSLILITSRDKGVLRGSKVDESSIYTLTGLNEQHSLELFCSHAFSQAYPLAGFE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
302		66		33	0.997454
326		33		66	0.997461

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain