SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33305

Length: 1056 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene33305

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Class IV chitinase Chia4-Pa1.3 n=10 Tax=Picea RepID=Q6WSS1_PICAB	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	class iv chitinase chia4-	-	-	90%

Source	InterPros	Term	Type	Identity
Blast2go	Glycoside hydrolase, family 19, catalytic	IPR000726	-	90%
Blast2go	Chitin-binding, type 1	IPR001002	-	90%
Blast2go	Glycoside hydrolase, family 19	IPR016283	-	90%
Blast2go	Chitin-binding, type 1, conserved site	IPR018371	-	90%
Blast2go	Lysozyme-like domain	IPR023346	-	90%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP56

Fln msg:

Fln protein: MGTRTGRSVIASPYEHMVLRMSMVLLLVVVVSVNVVNAQNCGCASGLCCSKWGYCGTTSAYCGNGCQSGPCYGSGGGSPSGGGGNVGTIISQNFFSGLANAAGSSCEGKGFYTYNAFITAANAYSGFGTTGASADQKRELAAFFANVMHETGGLCYINEINPSSNYCQSSSTWPCASGKSYHGRGPIQLSWNYNYGAAGQDIGFDGLNNPEKVGQDATISFKTAVWFWMKNSKCHSAITSGQGFGGTIKAINSGECNGGNSGQVNSRVNYYKKFCSQLGVDPGTNISC*

Protein Length: 290

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGAGTGAATGTGAGAGTCCTGAGAGATTATTAGTA_-_ATGGGGACTCGTACTGGTAGATCGGTGATTGCTAGCCCTTATGAGCATATGGTGCTGAGGATGAGTATGGTGCTACTGTTAGTGGTGGTCGTGAGTGTTAACGTTGTTAATGCTCAAAACTGTGGCTGCGCCAGCGGACTGTGTTGCAGTAAGTGGGGATACTGCGGCACCACCTCTGCTTATTGCGGCAATGGCTGCCAGAGCGGCCCCTGTTACGGCTCAGGTGGAGGATCTCCAAGTGGTGGAGGTGGAAACGTGGGAACTATAATTTCTCAGAATTTCTTCAGTGGCCTAGCCAACGCTGCTGGTAGCTCGTGCGAGGGCAAGGGTTTCTACACTTACAACGCTTTCATCACAGCTGCCAATGCGTATTCTGGATTTGGCACCACCGGTGCCAGCGCCGACCAGAAGAGAGAGCTCGCTGCCTTCTTCGCTAATGTGATGCACGAAACTGGAGGACTGTGCTACATAAACGAGATAAATCCTTCGTCAAACTACTGTCAGAGTTCCAGCACGTGGCCGTGCGCGAGCGGGAAGAGCTACCATGGGCGTGGCCCCATCCAACTAAGCTGGAATTACAATTATGGAGCGGCGGGGCAGGACATTGGCTTCGACGGGCTGAACAACCCAGAGAAAGTGGGGCAAGACGCCACCATTTCGTTCAAGACGGCTGTGTGGTTCTGGATGAAGAACAGCAAGTGCCATTCTGCCATAACCTCCGGGCAGGGTTTCGGTGGGACAATCAAAGCCATCAACAGCGGGGAGTGCAACGGTGGAAATAGTGGGCAGGTGAATAGCAGAGTGAATTACTACAAGAAATTCTGTAGCCAGTTGGGCGTGGATCCGGGAACCAACATCTCCTGCTAA___ATATATATTTTCATGCCCGCCAAATATATAACTAAATAATCCGCTACTGGAAAATGTAAGTCTATGCTGAACTGGTGAATAAAAGTTGCGCTGCAGCACCTCGTGCTTGATAGGTACATTCCGTTGCAAA

Fln Alignment:

sp_v1.1_unigene33305___AQNCGCASGLCCSKWGYCGTTSAYCGNXXXXXXXXXXXXXXXXXXXXNVGTIISQNFFSGLANAAGSSCEGKGFYTYNAFITAANAYSGFGTTGASADQKRELAAFFANVMHETGGLCYINEINPSSNYCQSSSTWPCASGKSYHGRGPIQLSWNYNYGAAGQDIGFDGLNNPEKVGQDATISFKTAVWFWMKNSKCHSAITSGQGFGGTIKAINSGECNGGNSGQVNSRVNYYKKFCSQLGVDPGTNISC
A9NP56_______________AQNCGCASGLCCSKWGYCGTTSAYCGNGCQSGPCSGGGSPSGGGG--NVGTIISQNFFNGLASGAGGSCEGKGFYTYNAFIAAANAYSGFGTTGANDVQKRELAAFFANVMHETGGLCYINEISPSSNYCQSSSTWPCTSGKSYHGRGPLQLSWNYNYGAAGQSIGFDGLNNPEKVGQDATISFKTAVWFWMKNSNCHSAITSGQGFGGTIKAINSGECNGGNSGQVNSRVTYYKKFCSQLGVDAGTNVSC

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
977	50		50		1.0
978		50	50		1.0
979	50			50	1.0
983	50		50		1.0
985	60	40			1.0
993	50			50	1.0
1037	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain