SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33282

Length: 3841 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene33282
CGTCGTGACCTTGGCTGTCACTCAACTTTCTATGATTTATATATCCTTCCCTGTTAAATTACTCTTTCTTCGAATTCTATTGCATTTGCATTCTTGGCATTTTCCGCCATCGCGAGTGTTAAATTTCAACCACATCGGTGAAATTCTGAGCTGTGAACGGGCTCTCGTTATTTTTTCTGTTTGGCTCAGATCTATCAGATTCCGCAAGTTTTATGTGATTTAGCGGGGGTTTTAACGTTACAGAAGGATCCACAGTCTCACACTTTGACGCCATGCCTCTCCGACTTGAAATCAAGAGGAAACTTGCCCAAAGGTCTGAACGTGTAAAGTCTGTAGATCTTCATCCTACGGAGCCATGGATGCTTGCAAGTCTTTATTCTGGCAGCGTTTGTATATGGAATTACCAGACACAGACTTTGGCAAAGTCTTTTGAAGTCACGGAACTTCCAGTGCGGTCTGCCAAGTTCATAGCACGCAAACAATGGGTTGTAGCTGGTGCAGATGACATGATTATCCGTGTTTACAATTATAACACCATGGATAAGGTGAAAGTATTTGAAGCACATACTGATTATATCAGGTGTGTGAGTGTTCATCCAACTCTACCATATGTGCTGTCATCATCTGATGACATGCTAATCAAGCTTTGGGACTGGGATAAAGGTTGGCAATGTACTCAAATATTTGAAGGTCATTCACACTATGTGATGCAAGTTGCGTTTAATCCCAAGGATACAAATACATTTGCAAGTGCCTCTCTAGACCGTACTATAAAGATCTGGAATCTTGGCTCACAAGAACCAAATTTTACTCTTGATGCCCATTTAAAGGGTGTAAACTGTGTTGATTACTTCACAGGAGGTGACAGACCATATCTTATTACTGGTTCAGATGATCACACAGCAAAGGTTTGGGACTACCAGACAAAAAGTTGCGTACAGACTCTGGAAGGACACACACATAATGTATCTGCAGTATGTTTTCACCCTGAACTTCCTATCATCATCACTGGTTCGGAAGATGGTACTGTTCGTATTTGGCATGCAACTACATACAGGCTGGAGAATACTCTGAACTATGGGCTGGAACGAGTCTGGGCCATTGGCTATTTGAAAAGCTCAAATCGGGTTGCTATTGGATATGATGAAGGTACAATCATGATAAAGATTGGTCGAGAAGAGCCAGTTGCTAGCATGGACAGCAGTGGGAAAATTATTTGGGCAAAGCACAATGAAATACAGACTGCGAACATTAAGGCAGTTGGAGCAGACATTGAGGTGACAGATGGGGAGAGATTCTCTTTAGGTGTGAAGGAATTGGGAAGCTGTGATCTATATCCACAGAGCTTAAAGCACAATCCAAATGGAAGATTTGTTGTGGTGTGTGGGGATGGCGAATACATTATTTATACAGCTCTTGCATGGAGAAACAGATCCTTTGGATCTGCCCTTGAGTTTGTGTGGGCATCGGATGGAGAATATGCAGTTCGGGAAAGCACTTCCAAGATTAAAATTTTCAGTAAAACATTTCAGGAGAGAAAAAGTATCAGGCCAACATTTTCAGCTGAGTCAATCTATGGTGGAGCATTGTTGGCGATATGTTCCAATGATTTTGTTTGCTTCTATGATTGGGCTGAATGTCGTGTAATTCGACGAATTGATGTTAGTGTGAAAAATGTCTATTGGGCTGACAGCGGAGATCTTCTTGCAATCACAAGTGACAATTCATTCTATATTTTGAAGTACAATCGCGAGGTTGTTTCTACATATCTGGATAGTGGCAAGCCTATTGATGAGCAGGGAGTTGAAGATGCATTTGAACTCATCCATGAGATAAATGAGCGGGTTCGGACTGGAATTTGGGTTGGGGATTGTTTCATATACAATAATTCAACATGGCGTCTTAATTATTGTGTTGGTGGTGAGGTAACTACCATGTTTCATTTGGATCGGCCCATGTATTTGTTAGGCTACCTTGCAAGTCAGAGCCGAGTATTCCTAATTGACAAAGAGTTCAATGTAGTGGGTTACACATTGCTTCTTAGCTTGATAGAGTACAAGACCCTTGTTCTGCGCGGAGACCTGGATAGGGCGAATGAGATTCTTCCCACGATTCCTAAGGAACAACTTAACAATGTGGCTCATTTTCTGGAGTCTCGTGGTATGCTGGATGAGGCGCTTGAAGTGGCTGTGGACCCTGATTACAAATTTGATCTAGCTATTCAACTTGGAAGAATTGGAGTAGCAAAGTCAATTGCAGTAGAAGCACAAAGTGAATCGAAATGGAAACATTTAGGAGAGCTAGCTATGTCTGCTGGAAAGTTAGACTTGGCAGAGGAATGTCTCAGCCATGCAGCTGATCTAAGTGGATTGTTGCTTCTCTACTCTGCTCTAGGAGATGCAGAAGGGATGGCCAAACTTGCCCAACTTGCAAGAGAGCAGGGGAAGAACAATGTTACATTTCTTTGTTTATTCATGCTAGGGAAATTAGAAGAATGCATCGATCTCTTGGTGGAGAGTAATCGCATACCGGAGGCTGCTTTTATGGCACGATCCTATCTACCAAGCAAGGTTTCAGAATTGGTCTCCATTTGGCGTAATGACCTAAGTAAGGTAAATCAAAAGGCTGCCGAATCTTTAGCAGATCCAGAGGACTATCCTAACCTCTTTGAAGACTGGCATTTGGCAATTGATGTTGAATCTAGGATGGGAAGTTCAAGGAATGACTATCCTCCTGCGGAGGATTATCTAAAGTATGTTGGTAAAATGAATGTCGACCTTATAGAAGAGTTTAAAAATATGGAAGTCAATGGAGACGTCCCTTTTGAAAATGGAGATTCTGTTCACGAGGCACGAGATATCAATGAAGAGGATGTTCTTGATGAAATGCAGGATGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGGAGATTCAACTGAAGGAGAGGTTCATGTTGAAATGCAAGATGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGAAGATTCTACTGAAGGAGAGGTTCTTGTTAATGGAAACGAGGCAGAAGAAGAGTGGGTTGTTCTAGCATAATGCTAGGATGTGTATTTCTGGGCTTCTCATTTCAGTAACTTACAGGAAGTAAAGTGTTACAAAGTGCAACGGAATTTCAAGGATTAATGGCTTGATCAATGTTTATGGTGGACAAGTGTGAGAAACGTGCCGAATAACCAGGTTCACATATGGAAAGCTATTGGATATATCCAAGCGGTGTTCTTTTAAGATATCTTGGGTCAATCCCACTTGAATTTAAGACCACTAGATGTGTTGGTCGTGAAAAAAGTCTGGGCTATTTTAGCCAAGATAAGAATGAGTAGGGCCCGAATGTCTAGTTGTAGCTGTTCATTTCTCCCACTTTTAAATATGTAGTTTTTTGGGTTTTTCAAAACGTGATAAGTTTTTGATCTAATGCATTCGTCTAAAATCAAACTGATTTTTCTTGGAAGACTTTATTTCCTCTGTTTTCTCCTACATATTTTGAAGTTTAGTTTATAGTCTGCAAAGAGATCCTCAAGCAGGATAAGATAACCCGGTTGGCTTCATCAGGGAAAATTATCCAGAACGGCAACTACTAGACCCCTTTACAATGGATTTGACATCCCAGACTGCAGAATGGAGAGGCATCTTTTCTATCTGTGAAATTTATATGCATTTGCTTTTTAGGCGCAACAAGACTAGTTAGTATTGAGCACGGGCTATACCACAGTAATTTCATTGTGCTAAAAACATGCTTCTATGCTGTAAGTTAGAAGATAAAACACCATGCCTTTCTTTCTGTGCTGGTCCCATGGATACTAGAG

Ace file of the UniGene sp_v1.1_unigene33282 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	coatomer beta subunit, putative (EC:2.7.11.7)	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	24%
Blast2go	coatomer protein subunit beta 2 (beta prime)	-	-	88%

Source	InterPros	Term	Type	Identity
Blast2go	WD40 repeat	IPR001680	-	88%
Blast2go	Coatomer, WD associated region	IPR006692	-	88%
Blast2go	WD40 repeat-like-containing domain	IPR011046	-	88%
Blast2go	Cytochrome cd1-nitrite reductase-like, C-terminal haem d1	IPR011048	-	88%
Blast2go	Tetratricopeptide-like helical	IPR011990	-	88%
Blast2go	WD40/YVTN repeat-like-containing domain	IPR015943	-	88%
Blast2go	Coatomer beta' subunit	IPR016453	-	88%
Blast2go	WD40-repeat-containing domain	IPR017986	-	88%
Blast2go	WD40 repeat, subgroup	IPR019781	-	88%
Blast2go	WD40 repeat 2	IPR019782	-	88%
Blast2go	G-protein beta WD-40 repeat	IPR020472	-	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPC1

Fln msg: your sequence is longer than subject: 934 - 314

Fln protein: MPLRLEIKRKLAQRSERVKSVDLHPTEPWMLASLYSGSVCIWNYQTQTLAKSFEVTELPVRSAKFIARKQWVVAGADDMIIRVYNYNTMDKVKVFEAHTDYIRCVSVHPTLPYVLSSSDDMLIKLWDWDKGWQCTQIFEGHSHYVMQVAFNPKDTNTFASASLDRTIKIWNLGSQEPNFTLDAHLKGVNCVDYFTGGDRPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATTYRLENTLNYGLERVWAIGYLKSSNRVAIGYDEGTIMIKIGREEPVASMDSSGKIIWAKHNEIQTANIKAVGADIEVTDGERFSLGVKELGSCDLYPQSLKHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWASDGEYAVRESTSKIKIFSKTFQERKSIRPTFSAESIYGGALLAICSNDFVCFYDWAECRVIRRIDVSVKNVYWADSGDLLAITSDNSFYILKYNREVVSTYLDSGKPIDEQGVEDAFELIHEINERVRTGIWVGDCFIYNNSTWRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVFLIDKEFNVVGYTLLLSLIEYKTLVLRGDLDRANEILPTIPKEQLNNVAHFLESRGMLDEALEVAVDPDYKFDLAIQLGRIGVAKSIAVEAQSESKWKHLGELAMSAGKLDLAEECLSHAADLSGLLLLYSALGDAEGMAKLAQLAREQGKNNVTFLCLFMLGKLEECIDLLVESNRIPEAAFMARSYLPSKVSELVSIWRNDLSKVNQKAAESLADPEDYPNLFEDWHLAIDVESRMGSSRNDYPPAEDYLKYVGKMNVDLIEEFKNMEVNGDVPFENGDSVHEARDINEEDVLDEMQDETIDGEKYVEAGDSTEGEVHVEMQDETIDGEKYVEAEDSTEGEVLVNGNEAEEEWVVLA*

Protein Length: 935

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTTTCTATGATTTATATATCCTTCCCTGTTAAATTACTCTTTCTTCGAATTCTATTGCATTTGCATTCTTGGCATTTTCCGCCATCGCGAGTGTTAAATTTCAACCACATCGGTGAAATTCTGAGCTGTGAACGGGCTCTCGTTATTTTTTCTGTTTGGCTCAGATCTATCAGATTCCGCAAGTTTTATGTGATTTAGCGGGGGTTTTAACGTTACAGAAGGATCCACAGTCTCACACTTTGACGCC_-_ATGCCTCTCCGACTTGAAATCAAGAGGAAACTTGCCCAAAGGTCTGAACGTGTAAAGTCTGTAGATCTTCATCCTACGGAGCCATGGATGCTTGCAAGTCTTTATTCTGGCAGCGTTTGTATATGGAATTACCAGACACAGACTTTGGCAAAGTCTTTTGAAGTCACGGAACTTCCAGTGCGGTCTGCCAAGTTCATAGCACGCAAACAATGGGTTGTAGCTGGTGCAGATGACATGATTATCCGTGTTTACAATTATAACACCATGGATAAGGTGAAAGTATTTGAAGCACATACTGATTATATCAGGTGTGTGAGTGTTCATCCAACTCTACCATATGTGCTGTCATCATCTGATGACATGCTAATCAAGCTTTGGGACTGGGATAAAGGTTGGCAATGTACTCAAATATTTGAAGGTCATTCACACTATGTGATGCAAGTTGCGTTTAATCCCAAGGATACAAATACATTTGCAAGTGCCTCTCTAGACCGTACTATAAAGATCTGGAATCTTGGCTCACAAGAACCAAATTTTACTCTTGATGCCCATTTAAAGGGTGTAAACTGTGTTGATTACTTCACAGGAGGTGACAGACCATATCTTATTACTGGTTCAGATGATCACACAGCAAAGGTTTGGGACTACCAGACAAAAAGTTGCGTACAGACTCTGGAAGGACACACACATAATGTATCTGCAGTATGTTTTCACCCTGAACTTCCTATCATCATCACTGGTTCGGAAGATGGTACTGTTCGTATTTGGCATGCAACTACATACAGGCTGGAGAATACTCTGAACTATGGGCTGGAACGAGTCTGGGCCATTGGCTATTTGAAAAGCTCAAATCGGGTTGCTATTGGATATGATGAAGGTACAATCATGATAAAGATTGGTCGAGAAGAGCCAGTTGCTAGCATGGACAGCAGTGGGAAAATTATTTGGGCAAAGCACAATGAAATACAGACTGCGAACATTAAGGCAGTTGGAGCAGACATTGAGGTGACAGATGGGGAGAGATTCTCTTTAGGTGTGAAGGAATTGGGAAGCTGTGATCTATATCCACAGAGCTTAAAGCACAATCCAAATGGAAGATTTGTTGTGGTGTGTGGGGATGGCGAATACATTATTTATACAGCTCTTGCATGGAGAAACAGATCCTTTGGATCTGCCCTTGAGTTTGTGTGGGCATCGGATGGAGAATATGCAGTTCGGGAAAGCACTTCCAAGATTAAAATTTTCAGTAAAACATTTCAGGAGAGAAAAAGTATCAGGCCAACATTTTCAGCTGAGTCAATCTATGGTGGAGCATTGTTGGCGATATGTTCCAATGATTTTGTTTGCTTCTATGATTGGGCTGAATGTCGTGTAATTCGACGAATTGATGTTAGTGTGAAAAATGTCTATTGGGCTGACAGCGGAGATCTTCTTGCAATCACAAGTGACAATTCATTCTATATTTTGAAGTACAATCGCGAGGTTGTTTCTACATATCTGGATAGTGGCAAGCCTATTGATGAGCAGGGAGTTGAAGATGCATTTGAACTCATCCATGAGATAAATGAGCGGGTTCGGACTGGAATTTGGGTTGGGGATTGTTTCATATACAATAATTCAACATGGCGTCTTAATTATTGTGTTGGTGGTGAGGTAACTACCATGTTTCATTTGGATCGGCCCATGTATTTGTTAGGCTACCTTGCAAGTCAGAGCCGAGTATTCCTAATTGACAAAGAGTTCAATGTAGTGGGTTACACATTGCTTCTTAGCTTGATAGAGTACAAGACCCTTGTTCTGCGCGGAGACCTGGATAGGGCGAATGAGATTCTTCCCACGATTCCTAAGGAACAACTTAACAATGTGGCTCATTTTCTGGAGTCTCGTGGTATGCTGGATGAGGCGCTTGAAGTGGCTGTGGACCCTGATTACAAATTTGATCTAGCTATTCAACTTGGAAGAATTGGAGTAGCAAAGTCAATTGCAGTAGAAGCACAAAGTGAATCGAAATGGAAACATTTAGGAGAGCTAGCTATGTCTGCTGGAAAGTTAGACTTGGCAGAGGAATGTCTCAGCCATGCAGCTGATCTAAGTGGATTGTTGCTTCTCTACTCTGCTCTAGGAGATGCAGAAGGGATGGCCAAACTTGCCCAACTTGCAAGAGAGCAGGGGAAGAACAATGTTACATTTCTTTGTTTATTCATGCTAGGGAAATTAGAAGAATGCATCGATCTCTTGGTGGAGAGTAATCGCATACCGGAGGCTGCTTTTATGGCACGATCCTATCTACCAAGCAAGGTTTCAGAATTGGTCTCCATTTGGCGTAATGACCTAAGTAAGGTAAATCAAAAGGCTGCCGAATCTTTAGCAGATCCAGAGGACTATCCTAACCTCTTTGAAGACTGGCATTTGGCAATTGATGTTGAATCTAGGATGGGAAGTTCAAGGAATGACTATCCTCCTGCGGAGGATTATCTAAAGTATGTTGGTAAAATGAATGTCGACCTTATAGAAGAGTTTAAAAATATGGAAGTCAATGGAGACGTCCCTTTTGAAAATGGAGATTCTGTTCACGAGGCACGAGATATCAATGAAGAGGATGTTCTTGATGAAATGCAGGATGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGGAGATTCAACTGAAGGAGAGGTTCATGTTGAAATGCAAGATGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGAAGATTCTACTGAAGGAGAGGTTCTTGTTAATGGAAACGAGGCAGAAGAAGAGTGGGTTGTTCTAGCATAA___TGCTAGGATGTGTATTTCTGGGCTTCTCATTTCAGTAACTTACAGGAAGTAAAGTGTTACAAAGTGCAACGGAATTTCAAGGATTAATGGCTTGATCAATGTTTATGGTGGACAAGTGTGAGAAACGTGCCGAATAACCAGGTTCACATATGGAAAGCTATTGGATATATCCAAGCGGTGTTCTTTTAAGATATCTTGGGTCAATCCCACTTGAATTTAAGACCACTAGATGTGTTGGTCGTGAAAAAAGTCTGGGCTATTTTAGCCAAGATAAGAATGAGTAGGGCCCGAATGTCTAGTTGTAGCTGTTCATTTCTCCCACTTTTAAATATGTAGTTTTTTGGGTTTTTCAAAACGTGATAAGTTTTTGATCTAATGCATTCGTCTAAAATCAAACTGATTTTTCTTGGAAGACTTTATTTCCTCTGTTTTCTCCTACATATTTTGAAGTTTAGTTTATAGTCTGCAAAGAGATCCTCAAGCAGGATAAGATAACCCGGTTGGCTTCATCAGGGAAAATTATCCAGAACGGCAACTACTAGACCCCTTTACAATGGATTTGACATCCCAGACTGCAGAATGGAGAGGCATCTTTTCTATCTGTGAAATTTATATGCATTTGCTTTTTAGGCGCAACAAGACTAGTTAGTATTGAGCACGGGCTATACCACAGTAATTTCATTGTGCTAAAAACATGCTTCTATGCTGTAAGTTAGAAGATAAAACACCATGCCTTTCTTTCTGTGCTGGTCCCATGGATACTAGAG

Fln Alignment:

sp_v1.1_unigene33282___EIKRKLAQRSERVKSVDLHPTEPWMLASLYSGSVCIWNYQTQTLAKSFEVTELPVRSAKFIARKQWVVAGADDMIIRVYNYNTMDKVKVFEAHTDYIRCVSVHPTLPYVLSSSDDMLIKLWDWDKGWQCTQIFEGHSHYVMQVAFNPKDTNTFASAS-------------------------------------------LDRTIKIWNLGSQEPNFTLDAHLKGVNCV-DYFTGGDRPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGS--EDGTVRIW
A9NPC1_______________KLKHILTGHKRAVSSVKFSADGKLLGSASADKSVRIWSAGDGSAKRELQGHAEGVSDMAWSSDSHYVCSASDDKTLRIWDVHTGDCIKTLKGHTNYVFCVNFNPQSNLIVSGSFDETVRIWDVRTG-KCLKVLPAHSDPVTAVHFN-RDGSLIVSSSYDGLCRIWDSATGHCLKTLIDDENPPVSFVNFSPNGKFILAGTLDNTLRLWNFATGKFLKTYTGHVNSKYCISSTFSVTNGKYIVSGSEDNCVYLWDLQARNIVQKLEGHTDTVISVSCHPTENKIASGALENDKTLRIW

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
3684	88	11			0.923667
3685		11	88		0.923667
3729		87	12		0.992554
3740			11	88	0.923834
3741			11	88	0.923834
3749		11		88	0.92373
3774		50		50	1.0
3789	50	50			1.0
3812			83	16	0.994512
3813	80		20		0.995493
3816	80			20	0.995493
3817	80		20		0.995493
3819		20	80		0.995493
3823		20		80	0.995493
3826			16	83	0.994515
3827			16	83	0.994515
3829	83	16			0.994514
3830	83		16		0.994516
3834		16	83		0.994515
3839	25		50	25	0.995533
3840		20	80		0.995496
3846		33		66	0.997452
3850		33		66	0.997452
3854	75		25		0.996483
3859			25	75	0.996479

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain