SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33254

Length: 390 nt

Origin of reads: Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene33254
GCCGGAATTAATCCTTACAAAATGAGCAGGTCGTCTCTACGTTCCTTGGTGATCAGAGCCCTGCCCAAAGGCAAGTACGGGTGTTTAAGAAGATCAGATGATATAAACATAAATGAACCATCTTCATGTGCTATCTGCATGAGTTGTATTCTTGAGGAGGATGAAGTCCGAACTCTTCCCAATTGCGGACATTATTTTCATATTTCCTGCATCGACCGCTGGCTTCTTCCATGTACTGTGAATCACTCTTCATGCCCTTTGTGCAGGGCAGCCGTTATTGTCCTCGGCTCCTGACAAGGGGTTGAAGGTGCCCACATACGCAAATACTGAAAAATGGAGGCTTTTAGTCCCTCCTTATTTTGGTGCCTGGTTTACTTGATCCTCCATGGA

Ace file of the UniGene sp_v1.1_unigene33254 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ring finger protein, putative	-	-	5.0e-12	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	ring finger	-	-	4.30326e-33	58%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	4.30326e-33	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	4.30326e-33	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1W7

Fln msg: your sequence is shorter than subject: 98 - 198

Fln protein: AGINPYKMSRSSLRSLVIRALPKGKYGCLRRSDDININEPSSCAICMSCILEEDEVRTLPNCGHYFHISCIDRWLLPCTVNHSSCPLCRAAVIVLGS*

Protein Length: 99

Fln nts: GCCGGAATTAATCCTTACAAAATGAGCAGGTCGTCTCTACGTTCCTTGGTGATCAGAGCCCTGCCCAAAGGCAAGTACGGGTGTTTAAGAAGATCAGATGATATAAACATAAATGAACCATCTTCATGTGCTATCTGCATGAGTTGTATTCTTGAGGAGGATGAAGTCCGAACTCTTCCCAATTGCGGACATTATTTTCATATTTCCTGCATCGACCGCTGGCTTCTTCCATGTACTGTGAATCACTCTTCATGCCCTTTGTGCAGGGCAGCCGTTATTGTCCTCGGCTCCTGA___CAAGGGGTTGAAGGTGCCCACATACGCAAATACTGAAAAATGGAGGCTTTTAGTCCCTCCTTATTTTGGTGCCTGGTTTACTTGATCCTCCATGGA

Fln Alignment:

sp_v1.1_unigene33254___NPYKMSRSSLRSLVIRALPKGKYGCLRRSDDININEPSS--CAICMSCILEEDEVRTLPNCGHYFHISCIDRWLLPCTVNHSSCPLCRAAVIVLGS*Q
A9P1W7_______________NPNKMSTLSCRSKMIGALPKGKYGCLRRSDDANRNDSSSSSCAICLGGIGEEDGVRILPNCRHYFHISCIDRWLLPCTVNNSSCPLCRATVIGLHSSQ

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
218	25		75		0.996473
311		66		33	0.997476
312		66	33		0.997476
325	33			66	0.997476
329			66	33	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain