SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33252

Length: 427 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene33252
TTTCCCTGGAGTCTTGTTGACAGCTCTGGTTCATGGGAAAGAAAAGCTGATATATTTGATGGGTTAGGCTTTACACTATGAGGGCCTTGCGCAGAGCACAGAGGGTTATGGATTGACAGAGTCTAGCGGGTCCGTAGCCATGACTATAACGGATGCAGAAAACGAACATTATGGAACGGCAGGCTTGCTTGCAGCTAACGTAGAAGCTAAAGTGGTAGACACAGCCAGTGGCAAAGCTATGCCTCCCAACCATAAAGGCGAGCTCTGGTTGCGAGGACCTACAATCATGAAAGGTTATTTGGGTAATGATGAAGCAACTGCATCAACTTTAGACTTAGAGGGATGGCTGAAAACTGGGGATCTATGTTACTTTGATGAGGAGGGTTTCCTTTTTGTTGTGGACAGAATAAAAGAGTTGATCAAGTAC

Ace file of the UniGene sp_v1.1_unigene33252 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AMP dependent CoA ligase, putative n=1 Tax=Ricinus communis RepID=B9R8J7_RICCO	-	-	3.0e-37	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	69%
Blast2go	amp dependent	-	-	1.26902e-40	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Fatty-acyl-CoA synthase.	EC:2.3.1.86	-	1.26902e-40	81%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid biosynthesis	00061		1.26902e-40	81%
Blast2go	Metabolic pathways	01100		1.26902e-40	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	auxin biosynthetic process	GO:0009851	Biological Process	1.26902e-40	81%
Blast2go	jasmonic acid biosynthetic process	GO:0009695	Biological Process	1.26902e-40	81%
Blast2go	fatty-acyl-CoA synthase activity	GO:0004321	Molecular Function	1.26902e-40	81%
Blast2go	peroxisome	GO:0005777	Cellular Component	1.26902e-40	81%

Source	InterPros	Term	Type	e value	Identity
Blast2go	AMP-dependent synthetase/ligase	IPR000873	-	1.26902e-40	81%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LP93

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 100 aas, your sequence is shorter than subject: 142 - 548

Fln protein: FPGVLLTALVHGKEKLIYLMG*ALHYEGLAQSTEGYGLTESSGSVAMTITDAENEHYGTAGLLAANVEAKVVDTASGKAMPPNHKGELWLRGPTIMKGYLGNDEATASTLDLEGWLKTGDLCYFDEEGFLFVVDRIKELIKY

Protein Length: 143

Fln nts: TTTCCCTGGAGTCTTGTTGACAGCTCTGGTTCATGGGAAAGAAAAGCTGATATATTTGATGGGTTAGGCTTTACACTATGAGGGCCTTGCGCAGAGCACAGAGGGTTATGGATTGACAGAGTCTAGCGGGTCCGTAGCCATGACTATAACGGATGCAGAAAACGAACATTATGGAACGGCAGGCTTGCTTGCAGCTAACGTAGAAGCTAAAGTGGTAGACACAGCCAGTGGCAAAGCTATGCCTCCCAACCATAAAGGCGAGCTCTGGTTGCGAGGACCTACAATCATGAAAGGTTATTTGGGTAATGATGAAGCAACTGCATCAACTTTAGACTTAGAGGGATGGCTGAAAACTGGGGATCTATGTTACTTTGATGAGGAGGGTTTCCTTTTTGTTGTGGACAGAATAAAAGAGTTGATCAAGTAC

Fln Alignment:

sp_v1.1_unigene33252___QSTEGYGLTESSGSVAMTITDAENEHYGTAGLLAANVEAKVVDTASGKAMPPNHKGELWLRGPTIMKGYLGNDEATASTLDLEGWLKTGDLCYFDEEGFLFVVDRIKELIKY
B8LP93_______________QIRQGYGLTETTGAIAYTNSDEENRRNGTVGLLSDVVEAKVVDPDSAKPLPPNQRGELWLRGPTVMKGYFGNEHATATTLDSEGWLRTGDLCYFDEEGFLFVVDRLKDLIKY

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
41	66		33		0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain