SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33251

Length: 518 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene33251
GCAATCGAATTTCTTCAGAGAATGGTTAGTGTGGGCTACCCACCAGATGCAATTGTATATGATATAACGATTCGTGCCGTTTGCAATTTAGGGAGCATCCAAAGTGCGCTTCGGCTTTTTGATAGATTAAAAGAAGAAGGCATTACGCCTTTGTCTTTTACTTACAGGCATATTCTTAATGCACTCCTTCAAATCAGAGGTTTTGACGAAGCACATTCATTCCTGATTCAACACATTGGAAAGAATCGCGAACTGGATTCGAGCAACTATAGATATTTGATTAAGGTCTGTAACAGATTAGGCCAAGAGCAAGCAGCACGCAATCTGACATTGGAAATGAAGGCTAAGGGATTTGCTTGATGCGTTTATTGTCAAAAGACGCTTGCCTGTACTTGGGTATAGAATCTGTTGATGGGCTGCAAATCAGTCAAGGGAAAGGAAGGAGAAGCTATTACAAGAGGCCATAGTAACCTGCCCTAATACCATAATATGACTAATTGATATTTGTGAAGAATTAA

Ace file of the UniGene sp_v1.1_unigene33251

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide (PPR) repeat-containing protein	-	-	8.0e-13	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	pentatricopeptide repeat-containing protein	-	-	1.36848e-40	62%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Pentatricopeptide repeat	IPR002885	-	1.36848e-40	62%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAX5

Fln msg: your sequence is shorter than subject: 120 - 433

Fln protein: AIEFLQRMVSVGYPPDAIVYDITIRAVCNLGSIQSALRLFDRLKEEGITPLSFTYRHILNALLQIRGFDEAHSFLIQHIGKNRELDSSNYRYLIKVCNRLGQEQAARNLTLEMKAKGFA*

Protein Length: 121

Fln nts: GCAATCGAATTTCTTCAGAGAATGGTTAGTGTGGGCTACCCACCAGATGCAATTGTATATGATATAACGATTCGTGCCGTTTGCAATTTAGGGAGCATCCAAAGTGCGCTTCGGCTTTTTGATAGATTAAAAGAAGAAGGCATTACGCCTTTGTCTTTTACTTACAGGCATATTCTTAATGCACTCCTTCAAATCAGAGGTTTTGACGAAGCACATTCATTCCTGATTCAACACATTGGAAAGAATCGCGAACTGGATTCGAGCAACTATAGATATTTGATTAAGGTCTGTAACAGATTAGGCCAAGAGCAAGCAGCACGCAATCTGACATTGGAAATGAAGGCTAAGGGATTTGCTTGA___TGCGTTTATTGTCAAAAGACGCTTGCCTGTACTTGGGTATAGAATCTGTTGATGGGCTGCAAATCAGTCAAGGGAAAGGAAGGAGAAGCTATTACAAGAGGCCATAGTAACCTGCCCTAATACCATAATATGACTAATTGATATTTGTGAAGAATTAA

Fln Alignment:

sp_v1.1_unigene33251___AIEFLQRMVSVGYPPDAIVYDITIRAVCNLGSIQSALRLFDRLKEEGITPLSFTYRHILNALLQIRGFDEAHSFLIQHIGKNRELDSSNYRYLIKVCNRLGQEQAARNLTLEMKAKGF
D5AAX5_______________AVKFVKRMVNMGWKPDAITHDIMIRAACNLGRIQGALKLFDRLKEEGLTPLYQTYVHILNGLFQIRGFDEAHSFLIQHGGKDRKLDSTNYIHLIKLSSKSGQEQGARNLMEEMKAKGF

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain