SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33223

Length: 2291 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene33223
CGTCGTGACCTTGGCTGTGACTTGTTATTGTTTTCGGAAGATATTGGGCCGCGACATACAGTGCAAACCCTAGAACCCGGGGAGTAATTGGGGTTTAGTATTCGTCATCAATCCACAGAGGCAGCCATGGATTCCGTGAGGAAGCAGTTGGACGCTCTAATGGGCGCCAATCGCAATGGCGACGTCAGGGAAGTCAACCGCAAGTATTATGATCGAGATGTCTGTCGACTGTATTTGGTCGGACTCTGCCCTCACGACCTCTTTCAGTTAACAAAAATGGATTTAGGTGCTTGCCCAAAAGTACACTCATTGCAGCTACGAAAAGAATATGAAGAATCAAAAGCAAAAGGAAAAGACAACTATGACAGGGAGTTGGAGGATGTAATTGAGAAACTCATTATCGAGTGTGATAGGAAAATTACAAGAGCATTGAAACGCCTTGAAGAAGATGATGCTAAGGCTGCAATCGCAATTGCTGTATCTGATGTTACAAAGTCACCAGAAGTGGATGAATACTCCAAGCAAATAAAGGAGAAGCTGAAAGAAGCAGATCTTCTGGACTTGGAAGGGAAATCTGACAATAAGATTAGGGTAATGGAGCAAGTTGAAGAGCTGAGAGGAAAACGAGCTGATAAACAGGCTACGCTTCTTTTGGAGGCTTTTAATAAGGATAGAGCTATGATGCCTCAACCACTTCAAAATCCTCCTCCACTGGCTCCTTTGCCGTTACCTCCTGATGCACGGACGCAGGAAATGATAATGGAGAAGCTCAAAATGGCTGAGGAACTGGGAGAAATGGGAATGGTTGATGAAGCACAAAGAGCTTTGGAGGAAGCGGAGGCTCTGAAAAAGATTGGTGGCAGGCAGGAACCAGCAAACGATTCTACGAAGTACACCTCCGTCGATGTGCGCATTACTGATCAGAAGCTTCGTGTATGCGACATTTGTGGAGCTTTCTTGAGTGTTTATGACAGTGATCGTCGGTTGGCTGATCATTTTGGAGGGAAACTTCATTTAGGGTATATGCAAATCCGAGAGAAGCTGGTTGATCTGCAGGAAGAAAGAAATAAACTCAGAAGACAGGATCGATCTGAAGACGATGGAAGGTTGAGAGATCGGGCATCCAGCAGGGACAGAGATAGGGCAGTCAGCAGGGACAGAGATAGGGAGAGAGATGAGCGTGATCGTGGTCGAGATAGTGTTGGAAGCAGAGATCGAGAACGTGATAGAGGGAGAGAAAGGGATCGTGATCGCAGAAGCAGAGACAGAGAGCGGGGGAACGAGAAGGAGCGTGATAGGGATTTGGAAAGTTCTCGAAGTTATGACTCCCGCAGTCGCAGGAGGTCACGTTCACGGTCAAGAGAAAGATTAACTGAACACTCCAGAGATCGTGAAAGGGACAGGAGTGACCGTCACAGGCGGTATGATAGGCATGATCGGTACTGAAATGATACATGATCAGAACAGAACATTGTTGAGGCCGTTTCTCACGCCCCAGCCACAATCTTATGTAATTTTGAACTTCGTTTAGAAAATACTTGTAGCTTCAAATTTATCTTACTCATGGATCAAGGCTTTATATGTTTATCATCCAGAGACAGATATGCAGAACCAAAGGGAGTCATTATGCTGCAAATATTATGTTGGTGTTGTATATGAATATATTGCTCTAGCTTTAGTGTCACAATTAACTATTCATCAAAAGTTTAGAGGTGGTAAAGGTTGATTGGCATTGCTAAATTGCGGTCTTAGAATGTCAAGCTTGGATAGAATCAGATCTGATGGGCTGCAAGTGCACTTTTTTTGGGTGTGTTTTACGGATTCTTCTGATCTGCATCTGATTGAATTCATCTCACAGAATTTTTCATTGGATTGTTAACATGACAGCATTAGCCTTCAAATTTGAATGTCTTGTATACCATTGGAACTTATGGCTAATAAAATTATAGAGCTATGGCATGCACCGTATAGGATTGATAATGTGCTCTGAATTTCCGACAGTCAAGATGCAAGGCTATAAATGGAACATCACATGCTGGTGGGATTCAGCATGAAGTCAGATCAGGGACGATGCCTAGGTGAGATATTGCCTTTTATCTACTACAGGGAGTGAGGTGCATCCATAACTGTACATGAATGAGGATAATTGTAAGGTCTCCTTGAAGTATGTTCTGTAGGTGAGTTATTGCCTTTTATCTAGAACGAGAGAAGTGAATCCATAGCTTAACATGCATACGAGGATAAATGTAAAGTATTCTTTGAAGTGATGCTCAGCCTTATTTTAGGATTTC

Ace file of the UniGene sp_v1.1_unigene33223

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9RM51_RICCO	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Blast2go	rna-binding protein luc7-like expressed	-	-	85%

Source	InterPros	Term	Type	e value	Identity
Blast2go	LUC7-related	IPR004882	-	0.0	85%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ABV1

Fln msg:

Fln protein: MDSVRKQLDALMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHDLFQLTKMDLGACPKVHSLQLRKEYEESKAKGKDNYDRELEDVIEKLIIECDRKITRALKRLEEDDAKAAIAIAVSDVTKSPEVDEYSKQIKEKLKEADLLDLEGKSDNKIRVMEQVEELRGKRADKQATLLLEAFNKDRAMMPQPLQNPPPLAPLPLPPDARTQEMIMEKLKMAEELGEMGMVDEAQRALEEAEALKKIGGRQEPANDSTKYTSVDVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLVDLQEERNKLRRQDRSEDDGRLRDRASSRDRDRAVSRDRDRERDERDRGRDSVGSRDRERDRGRERDRDRRSRDRERGNEKERDRDLESSRSYDSRSRRRSRSRSRERLTEHSRDRERDRSDRHRRYDRHDRY*

Protein Length: 441

Fln nts: CGTCGTGACCTTGGCTGTGACTTGTTATTGTTTTCGGAAGATATTGGGCCGCGACATACAGTGCAAACCCTAGAACCCGGGGAGTAATTGGGGTTTAGTATTCGTCATCAATCCACAGAGGCAGCC_-_ATGGATTCCGTGAGGAAGCAGTTGGACGCTCTAATGGGCGCCAATCGCAATGGCGACGTCAGGGAAGTCAACCGCAAGTATTATGATCGAGATGTCTGTCGACTGTATTTGGTCGGACTCTGCCCTCACGACCTCTTTCAGTTAACAAAAATGGATTTAGGTGCTTGCCCAAAAGTACACTCATTGCAGCTACGAAAAGAATATGAAGAATCAAAAGCAAAAGGAAAAGACAACTATGACAGGGAGTTGGAGGATGTAATTGAGAAACTCATTATCGAGTGTGATAGGAAAATTACAAGAGCATTGAAACGCCTTGAAGAAGATGATGCTAAGGCTGCAATCGCAATTGCTGTATCTGATGTTACAAAGTCACCAGAAGTGGATGAATACTCCAAGCAAATAAAGGAGAAGCTGAAAGAAGCAGATCTTCTGGACTTGGAAGGGAAATCTGACAATAAGATTAGGGTAATGGAGCAAGTTGAAGAGCTGAGAGGAAAACGAGCTGATAAACAGGCTACGCTTCTTTTGGAGGCTTTTAATAAGGATAGAGCTATGATGCCTCAACCACTTCAAAATCCTCCTCCACTGGCTCCTTTGCCGTTACCTCCTGATGCACGGACGCAGGAAATGATAATGGAGAAGCTCAAAATGGCTGAGGAACTGGGAGAAATGGGAATGGTTGATGAAGCACAAAGAGCTTTGGAGGAAGCGGAGGCTCTGAAAAAGATTGGTGGCAGGCAGGAACCAGCAAACGATTCTACGAAGTACACCTCCGTCGATGTGCGCATTACTGATCAGAAGCTTCGTGTATGCGACATTTGTGGAGCTTTCTTGAGTGTTTATGACAGTGATCGTCGGTTGGCTGATCATTTTGGAGGGAAACTTCATTTAGGGTATATGCAAATCCGAGAGAAGCTGGTTGATCTGCAGGAAGAAAGAAATAAACTCAGAAGACAGGATCGATCTGAAGACGATGGAAGGTTGAGAGATCGGGCATCCAGCAGGGACAGAGATAGGGCAGTCAGCAGGGACAGAGATAGGGAGAGAGATGAGCGTGATCGTGGTCGAGATAGTGTTGGAAGCAGAGATCGAGAACGTGATAGAGGGAGAGAAAGGGATCGTGATCGCAGAAGCAGAGACAGAGAGCGGGGGAACGAGAAGGAGCGTGATAGGGATTTGGAAAGTTCTCGAAGTTATGACTCCCGCAGTCGCAGGAGGTCACGTTCACGGTCAAGAGAAAGATTAACTGAACACTCCAGAGATCGTGAAAGGGACAGGAGTGACCGTCACAGGCGGTATGATAGGCATGATCGGTACTGA___AATGATACATGATCAGAACAGAACATTGTTGAGGCCGTTTCTCACGCCCCAGCCACAATCTTATGTAATTTTGAACTTCGTTTAGAAAATACTTGTAGCTTCAAATTTATCTTACTCATGGATCAAGGCTTTATATGTTTATCATCCAGAGACAGATATGCAGAACCAAAGGGAGTCATTATGCTGCAAATATTATGTTGGTGTTGTATATGAATATATTGCTCTAGCTTTAGTGTCACAATTAACTATTCATCAAAAGTTTAGAGGTGGTAAAGGTTGATTGGCATTGCTAAATTGCGGTCTTAGAATGTCAAGCTTGGATAGAATCAGATCTGATGGGCTGCAAGTGCACTTTTTTTGGGTGTGTTTTACGGATTCTTCTGATCTGCATCTGATTGAATTCATCTCACAGAATTTTTCATTGGATTGTTAACATGACAGCATTAGCCTTCAAATTTGAATGTCTTGTATACCATTGGAACTTATGGCTAATAAAATTATAGAGCTATGGCATGCACCGTATAGGATTGATAATGTGCTCTGAATTTCCGACAGTCAAGATGCAAGGCTATAAATGGAACATCACATGCTGGTGGGATTCAGCATGAAGTCAGATCAGGGACGATGCCTAGGTGAGATATTGCCTTTTATCTACTACAGGGAGTGAGGTGCATCCATAACTGTACATGAATGAGGATAATTGTAAGGTCTCCTTGAAGTATGTTCTGTAGGTGAGTTATTGCCTTTTATCTAGAACGAGAGAAGTGAATCCATAGCTTAACATGCATACGAGGATAAATGTAAAGTATTCTTTGAAGTGATGCTCAGCCTTATTTTAGGATTTC

Fln Alignment:

sp_v1.1_unigene33223___MDSVRKQLDALMGANRNGDVREVNRKYYDRDVCRLYLVGLCPHDLFQLTKMDLGACPKVHSLQLRKEYEESKAKGKDNYDRELEDVIEKLIIECDRKITRALKRLXXXXXXXXXXXXVSDVTKSPEVDEYSKQIXXXXXXXXXXXXXXXSDNKIRVMEQVEELRGKRADKQATLLLEAFNKDRAMM--XXXXXXXXXXXXXXXXXDARTQEMIMEKLKMAEELGEMGMVDXXXXXXXXXXXXKKIGGRQEPANDSTKYTSVDVRITDQKLRVCDICGAFLSVYDSDRRLADHFGGKLHLGYMQIREKLVDLQEERNKLRRQDR
D5ABV1_______________MDSLRKQLDTLMGTNRNGDVTEIKRNYYDRDVCRLYLAGLCPHDLFQLTKMDLGACSKVHSLQLRKEYESAKAKAKDNYDRELEDVLERHIGECDRKITRALRRLEDDDAKAATAISVSAVTQSPEVEEYTKQIKEKLKEAEYLDLEGRSDDKIRIMELVEELRAKRADKQAMLLLEAFNKDRASMPQPLQTPPPLAPLPMPGPPDARTQEMIIERLRKAEELGELGRVDEAQKFMEEAEALKKLGARQEAGADSSKLAAVDVRITDQKLRVCDICGAFLSIYDSDRRLADHFGGKLHLGYMQIRQKLTDLREERNKLRKLDR

SNPs (tot: 53)

Position	A %	C %	G %	T %	Probability
290		33	66		0.997452
295			33	66	0.997452
298	33	66			0.997452
301	66			33	0.997452
302	66			33	0.997452
303	66		33		0.997452
304	66		33		0.997452
305		33	66		0.997452
308	66			33	0.997452
500	75			25	0.996473
501	75		25		0.996473
504	25			75	0.996473
506	75			25	0.996473
507		75	25		0.996473
904	85	14			0.993533
1076	90			10	0.90298
1078	90		10		0.90298
1135	11		88		0.991528
1399		84		15	1.0
1400	84	15			1.0
1401			84	15	1.0
1402	84			15	1.0
1405		16		83	1.0
1412	82	17			1.0
1451	90			9	0.999872
1453		9	90		0.999872
1457	9		90		0.999872
1479	91	8			0.999807
1481	91			8	0.999807
1482	91	8			0.999807
1483		90	9		0.999842
1484	90			9	0.999842
1487	90	9			0.999842
1489	90			9	0.999842
1491			9	90	0.999872
1493		9		90	0.999872
1496	90			9	0.999872
1497		9	90		0.999872
1498	9		90		0.999872
1502	9		90		0.999872
1756	37		62		1.0
1805			90	10	0.90298
1910	80		20		0.995493
1911			80	20	0.995493
1913	80		20		0.995493
1915			20	80	0.995493
1923	80		20		0.995493
1924	80		20		0.995493
1925	80	20			0.995493
1927			20	60	0.99255
1928	20			80	0.995493
1929	20	20	60		0.99255
1931	80	20			0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain