SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33191

Length: 396 nt

Origin of reads: Biogeco_1 Uagpf

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene33191
AAGTGTTAATGCGTCGTGACCTTGGCTGTCACTCAATTCTGTTATACCTGAATCAAAGACGTGTTGTCCATGTGGAAGCTCAATGGACAGTGACACAATGATTCAATGTGATGAAGCCAAATGTGGAGTTTGGCAACATGTAAGATGTGTGATTGTTCCAGAAAAGCCAGTTGAAAGTGTTCCACCAGAGATTCCCGTTCAATTTTACTGTGACATCTGTCGCATCAATCATGGGGATCCGTTTTGTGTAACTTTGGCACAGCCTTTACTCCCAACTAAGCTGATTACTACACCCATGACTGTAGATGGAACAAACCCTTCACAGGCTGTGGAGAAGACATTTGAATTAAGGAGGACAGACAGAGATCTTTTGCATAAACCGGACTATGATCTTCA

Ace file of the UniGene sp_v1.1_unigene33191 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	SIZ1; SIZ1; DNA binding / SUMO ligase	-	-	7.0e-25	44%
FL-Next	Isoform 2 of E3 SUMO-protein ligase SIZ1 OS=Arabidopsis thaliana GN=SIZ1	-	-	0.0	50%
Blast2go	protein	-	-	3.61752e-27	71%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell growth	GO:0016049	Biological Process	3.61752e-27	71%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	3.61752e-27	71%
Blast2go	cell division	GO:0051301	Biological Process	3.61752e-27	71%
Blast2go	response to freezing	GO:0050826	Biological Process	3.61752e-27	71%
Blast2go	regulation of abscisic acid mediated signaling pathway	GO:0009787	Biological Process	3.61752e-27	71%
Blast2go	regulation of salicylic acid metabolic process	GO:0010337	Biological Process	3.61752e-27	71%
Blast2go	binding	GO:0005488	Molecular Function	3.61752e-27	71%
Blast2go	SUMO ligase activity	GO:0019789	Molecular Function	3.61752e-27	71%
Blast2go	nucleus	GO:0005634	Cellular Component	3.61752e-27	71%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, PHD-type	IPR001965	-	3.61752e-27	71%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	3.61752e-27	71%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	3.61752e-27	71%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	3.61752e-27	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q680Q4-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 608 aas, your sequence is shorter than subject: 131 - 832

Fln protein: SVNAS*PWLSLNSVIPESKTCCPCGSSMDSDTMIQCDEAKCGVWQHVRCVIVPEKPVESVPPEIPVQFYCDICRINHGDPFCVTLAQPLLPTKLITTPMTVDGTNPSQAVEKTFELRRTDRDLLHKPDYDL

Protein Length: 132

Fln nts: AAGTGTTAATGCGTCGTGACCTTGGCTGTCACTCAATTCTGTTATACCTGAATCAAAGACGTGTTGTCCATGTGGAAGCTCAATGGACAGTGACACAATGATTCAATGTGATGAAGCCAAATGTGGAGTTTGGCAACATGTAAGATGTGTGATTGTTCCAGAAAAGCCAGTTGAAAGTGTTCCACCAGAGATTCCCGTTCAATTTTACTGTGACATCTGTCGCATCAATCATGGGGATCCGTTTTGTGTAACTTTGGCACAGCCTTTACTCCCAACTAAGCTGATTACTACACCCATGACTGTAGATGGAACAAACCCTTCACAGGCTGTGGAGAAGACATTTGAATTAAGGAGGACAGACAGAGATCTTTTGCATAAACCGGACTATGATCTTCA

Fln Alignment:

sp_v1.1_unigene33191___PESKTCCPCGSSMDSDTMIQCDEAKCGVWQHVRCXXXXXXXXXXXXXXXXVQFYCDICRINHGDPFCVTLAQPLLPTKLITTPMTVDGTNPSQAVEKTFELRRTDRDLLHKPDYDL
Q680Q4-2_____________PEIKVRCVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPE-SFYCEICRLTRADPFWVTVAHPLSPVRLTATTIPNDGASTMQSVERTFQITRADKDLLAKPEYDV

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
187	80	20			0.995493
189	80	20			0.995493
190	20		80		0.995493
346	25			75	0.996473
347			25	75	0.996473
348	25	75			0.996473
350	25		75		0.996473
351			75	25	0.996473
365		33		66	0.997455
366		33	66		0.997455
368	33		66		0.997456
380		33	66		0.997476
389	33	66			0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain