SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33181

Length: 439 nt

UniGene Fasta

>sp_v1.1_unigene33181
AAGATAGAGAAAAAGAATGTCTGGATAATTGCACAATGCTATATCGTTTTGTTTCAGAAGATCTTCACAAGTTCTCAATCTTACATCAAGTGTTTGGCGCCTGCAACGTTATCAAAATGATTCAAGAACTTCCCACGGACCAAAGAGCTGAAGCAATAAATAGTATGGTCTACGAAGCAAGTGCAAGACTACAGGACCCTGCATTGGGGTGTGCAGGCATAATACAGCAACTTCAACTCCAAATATCAGACCTGGAATCCAAAATAACTTCAACACAGGCAGTGATTCAAAAAGTGCTTTCCCAGCAGGCGCAACTTCTGGCCTCTATCCCAGGAATCAACAATAAATTTAATCCCGCGATGAGCACATCCCTAAACTATGCTGATGAGGAAAAGGAGAATTTATTCAATTCCAAAGGAATGGATTGAATCCAGTGCAA

Ace file of the UniGene sp_v1.1_unigene33181

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein, putative	-	-	9.0e-20	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Blast2go	lob domain-containing	-	-	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Lateral organ boundaries, LOB	IPR004883	-	0.0	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1U3

Fln msg: atg_distance in limit (1-15): atg_distance = 1,

Fln protein: MLYRFVSEDLHKFSILHQVFGACNVIKMIQELPTDQRAEAINSMVYEASARLQDPALGCAGIIQQLQLQISDLESKITSTQAVIQKVLSQQAQLLASIPGINNKFNPAMSTSLNYADEEKENLFNSKGMD*

Protein Length: 132

Fln nts: AAGATAGAGAAAAAGAATGTCTGGATAATTGCACA_-_ATGCTATATCGTTTTGTTTCAGAAGATCTTCACAAGTTCTCAATCTTACATCAAGTGTTTGGCGCCTGCAACGTTATCAAAATGATTCAAGAACTTCCCACGGACCAAAGAGCTGAAGCAATAAATAGTATGGTCTACGAAGCAAGTGCAAGACTACAGGACCCTGCATTGGGGTGTGCAGGCATAATACAGCAACTTCAACTCCAAATATCAGACCTGGAATCCAAAATAACTTCAACACAGGCAGTGATTCAAAAAGTGCTTTCCCAGCAGGCGCAACTTCTGGCCTCTATCCCAGGAATCAACAATAAATTTAATCCCGCGATGAGCACATCCCTAAACTATGCTGATGAGGAAAAGGAGAATTTATTCAATTCCAAAGGAATGGATTGA___ATCCAGTGCAA

Fln Alignment:

sp_v1.1_unigene33181___KECLDNCTMLYRFVSEDLHKFSILHQVFGACNVIKMIQELPTDQRAEAINSMVYEASARLQDPALGCAGXXXXXXXXXSDLESKITSTQAVIQKVLSQQAQLLASIPGINNKFNPAMSTSLNYADEEKENL
A9P1U3_______________KQCLDNCTILYRLASNDLHKFSILQKVFGACNVIKLIQDLSPDQRVDAINSMVYEASARLQDPALGCVGIIQQLQLQISDLQSRITATQATIQKIRSQEAQLVASIPGFNNKFNPTMSTSLNDSDDEDEDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain