SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33165

Length: 444 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene33165
CGTCGTGACCTTGGCTGTCACTCATTTCTCAACCTGGACAAGCCATGCTGAGCCAACTCTGCCCCATCTTATCCATATACCTATCAGCAGGGCATTGCATATCCTCCATACGGGTATACGACCTATGTGCCAGACATTGCTTACCATCAGAATATTTACAATCCTTATCTTGCACTCAATATCCTCAGATATATGGTGCATCTGGAACTGTTAGTCCTCCAGTATATCCTTACACTCATATGGGCCAAGCTTTGCAAGCTGGACCTGCTTTTCCACCCATCAAGGTTATGGAGTTCAGGGACCTCATCTTGTGCATTTTCCTGGGTCTGGAGGTGGTGCCATGACATCTATGCCTCAACAGTACGCTGCAACTGTACCAGTTATACAGGGACCAGTTCCATCAGCAGCACCTGCCCCAGGCCCATCACATCCACAGCTGGCAGG

Ace file of the UniGene sp_v1.1_unigene33165 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif (RRM)-containing protein	-	-	4.0e-08	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	unknown [Picea sitchensis]	-	-	4.13574e-15	83%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5ABU6

Fln msg: Distance to subject end: 21 aas, W1: There is no M at the beginning,

Fln protein: SSSISLHSYGPSFASWTCFSTHQGYGVQGPHLVHFPGSGGGAMTSMPQQYAATVPVIQGPVPSAAPAPGPSHPQLA

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTCAACCTGGACAAGCCATGCTGAGCCAACTCTGCCCCATCTTATCCATATACCTATCAGCAGGGCATTGCATATCCTCCATACGGGTATACGACCTATGTGCCAGACATTGCTTACCATCAGAATATTTACAATCCTTATCTTGCACTCAATATCCTCAGATATATGGTGCATCTGGAACTGTTAGTCCTCCAGTATATCCTTACACTCATATGGGCCAAGCTTTGCAAGCTGGACCTGCTTTTCCACCCATCAAGGTTATGGAGTTCAGGGACCTCATCTTGTGCATTTTCCTGGGTCTGGAGGTGGTGCCATGACATCTATGCCTCAACAGTACGCTGCAACTGTACCAGTTATACAGGGACCAGTTCCATCAGCAGCACCTGCCCCAGGCCCATCACATCCACAGCTGGCAGG

Fln Alignment:

sp_v1.1_unigene33165___GPSFASWTCFSTHQGYGVQGPHLVHFPGSGGGAMTSMPQQYAATVPVIQ
D5ABU6_______________GQALQAGPAFPTHQGYGVQGPHLVHFPGPGGGTMTSMPQQYAAAVPVIQ

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
49	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain