SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33161

Length: 325 nt

Origin of reads: Uagpf

UniGene Fasta

>sp_v1.1_unigene33161
CGTCGTGACCTTGGCTGTCACTCATTTTTTTATATGAAGTTACAAGACTAAACTGAGAAAAGCTCTTCCTCTAGGCTCTCAGCCTTCTGCTGTGCGTATAACCGTATCCTTTGCGAGCTCCGAGCATTGAAGCCCGAAGCAGTTCGATTCGATGGCAAATCCTCCAAAACCATGGAAGATCGAATACGCCAAGTCTTCAAGATCGACCTGCAAGACATGCAAAAATACCATCGAGAAAGACGTGCTGAGAATCGCCAAGATGATCGCTGCCACACAGTTCGATGGCTTCATGCCTATGTGGAATCACGCAGCCTGTATTCTGAAG

Ace file of the UniGene sp_v1.1_unigene33161

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	poly [ADP-ribose] polymerase, putative (EC:1.3.1.74); K10798 poly [ADP-ribose] polymerase [EC:2.4.2.30]	-	-	2.0e-20	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	68%
Blast2go	poly(adp-ribose) polymerase	-	-	5.02126e-21	81%

Source	ECs	Term	Type	e value	Identity
AutoFact		EC:2.4.2.3-	-	2.0e-20	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to oxidative stress	GO:0006979	Biological Process	5.02126e-21	81%
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	5.02126e-21	81%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	5.02126e-21	81%
Blast2go	DNA repair	GO:0006281	Biological Process	5.02126e-21	81%
Blast2go	binding	GO:0005488	Molecular Function	5.02126e-21	81%
Blast2go	catalytic activity	GO:0003824	Molecular Function	5.02126e-21	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AA06

Fln msg: Distance to subject end: 334 aas, your sequence is shorter than subject: 58 - 395

Fln protein: MANPPKPWKIEYAKSSRSTCKTCKNTIEKDVLRIAKMIAATQFDGFMPMWNHAACILK

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTTATATGAAGTTACAAGACTAAACTGAGAAAAGCTCTTCCTCTAGGCTCTCAGCCTTCTGCTGTGCGTATAACCGTATCCTTTGCGAGCTCCGAGCATTGAAGCCCGAAGCAGTTCGATTCG_-_ATGGCAAATCCTCCAAAACCATGGAAGATCGAATACGCCAAGTCTTCAAGATCGACCTGCAAGACATGCAAAAATACCATCGAGAAAGACGTGCTGAGAATCGCCAAGATGATCGCTGCCACACAGTTCGATGGCTTCATGCCTATGTGGAATCACGCAGCCTGTATTCTGAAG

Fln Alignment:

sp_v1.1_unigene33161___MANPP---KPWKIEYAKSSRSTCKTCKNTIEKDVLRIAKMIAATQFDGFMPMWNHAACILK
D5AA06_______________MENPNPTGKPWKVEYAKSSRSSCKTCKQPIGKGSLRIAKMVAARQFEGVMPIWNHVECILK

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
171	75			25	0.99649
172	66		33		0.997452
173	75		25		0.99649
174		75	25		0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain