SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33159

Length: 328 nt

Origin of reads: Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene33159
CGACTCTGAGAAGGTCGTTCATAAGGCTTTAGACCAAGCTTCAGTCAGCCGTACAACTGTTATAGTTGCTCATCGTCTCTCCACTATCCGCAATGCCGACATGATTGCCGTTGTTCAAGGGGGTCAGGTGATCGAGACAGGCCCGCATGAAGATCTGATACATAGACCCAACGGAGCATACGCTACTTTGGTGCAACTGCAACAGGCCGCAGCAGATGAGAAAACAGGGAGCCACAATAGGAATTGTAGCTTAGTAAGTAGATCCAGTTCGAACCTATCCGTTCTGTAATAATCCAGAACTGTTGGACAATGATACGATGTCTTCTGT

Ace file of the UniGene sp_v1.1_unigene33159 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	similar to P-glycoprotein	-	-	9.0e-20	67%
FL-Next	tr=MDR-like ABC transporter; Taxus cuspidata (Japanese yew).	-	-	0.0	55%
Blast2go	multidrug pheromone mdr abc transporter family	-	-	2.10171e-19	81%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-triphosphatase.	EC:3.6.1.15	-	2.10171e-19	81%

Source	KEGGs	Term	e value	Identity
Blast2go	Purine metabolism	00230	2.10171e-19	81%
Blast2go	Thiamine metabolism	00730	2.10171e-19	81%
Blast2go	Metabolic pathways	01100	2.10171e-19	81%

Source	GOs	Term	Type	e value	Identity
Blast2go	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	2.10171e-19	81%
Blast2go	mitochondrion	GO:0005739	Cellular Component	2.10171e-19	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: E6Y0T0

Fln msg: your sequence is shorter than subject: 96 - 1316

Fln protein: DSEKVVHKALDQASVSRTTVIVAHRLSTIRNADMIAVVQGGQVIETGPHEDLIHRPNGAYATLVQLQQAAADEKTGSHNRNCSLVSRSSSNLSVL*

Protein Length: 97

Fln nts: CGACTCTGAGAAGGTCGTTCATAAGGCTTTAGACCAAGCTTCAGTCAGCCGTACAACTGTTATAGTTGCTCATCGTCTCTCCACTATCCGCAATGCCGACATGATTGCCGTTGTTCAAGGGGGTCAGGTGATCGAGACAGGCCCGCATGAAGATCTGATACATAGACCCAACGGAGCATACGCTACTTTGGTGCAACTGCAACAGGCCGCAGCAGATGAGAAAACAGGGAGCCACAATAGGAATTGTAGCTTAGTAAGTAGATCCAGTTCGAACCTATCCGTTCTGTAA___TAATCCAGAACTGTTGGACAATGATACGATGTCTTCTGT

Fln Alignment:

sp_v1.1_unigene33159___DSEKVVHKALDQASVSRTTVIVAHRLSTIRNADMIAVVQGGQVIETGPHEDLIHRPNGAYATLVQLQQAAADEKTGS
E6Y0T0_______________ESERVVQEALDRIMVNRTTVIVAHRLTTVRNADMIAVVQRGSIVEKGSHSQLITNPSGAYSQLIHLQESNRSKEQDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain