SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33022

Length: 323 nt

Origin of reads: Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene33022
CCCACCTGTGGGCATAACTTTCATATCAACTGTATTGACTTATGGTTAAGGCAAAATTCGACCTGCCCAGTGTGCCGAGTATCTTTGCGGGATTCTGATGATACTAGAGTACCATCTCTTCCATTAAATGCAGAATTACAGTCAAGTTATAATTCTGGAACCATTTCTGGTAGCATTTCTGAACATTCTTATGCCTCTTTAAGCAGCAGCAGAGTGCAATCGACACATTGTGTGCAAGGTCAACAATCCTTAATGTCCTTTTCTTCAGAGGCATGCCAAAATGTCAGAGACCAAGACAAGGTCGATGAATTGACATCAGAAAG

Ace file of the UniGene sp_v1.1_unigene33022

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATL3; ATL3; protein binding / zinc ion binding	-	-	1.0e-08	35%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%
Blast2go	predicted protein [Populus trichocarpa]	-	-	7.29476e-12	57%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Zinc finger, RING-type	IPR001841	-	7.29476e-12	57%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	7.29476e-12	57%
Blast2go	Zinc finger, C3HC4 RING-type	IPR018957	-	7.29476e-12	57%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P249

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 107 - 292

Fln protein: PTCGHNFHINCIDLWLRQNSTCPVCRVSLRDSDDTRVPSLPLNAELQSSYNSGTISGSISEHSYASLSSSRVQSTHCVQGQQSLMSFSSEACQNVRDQDKVDELTSE

Protein Length: 108

Fln nts: CCCACCTGTGGGCATAACTTTCATATCAACTGTATTGACTTATGGTTAAGGCAAAATTCGACCTGCCCAGTGTGCCGAGTATCTTTGCGGGATTCTGATGATACTAGAGTACCATCTCTTCCATTAAATGCAGAATTACAGTCAAGTTATAATTCTGGAACCATTTCTGGTAGCATTTCTGAACATTCTTATGCCTCTTTAAGCAGCAGCAGAGTGCAATCGACACATTGTGTGCAAGGTCAACAATCCTTAATGTCCTTTTCTTCAGAGGCATGCCAAAATGTCAGAGACCAAGACAAGGTCGATGAATTGACATCAGAAAG

Fln Alignment:

sp_v1.1_unigene33022___PTCGHNFHINCIDLWLRQNSTCPVCRVSLRDSDDTRVPSLPLNAELQSSYNSGTISGSISEHSYASLSSSRVQSTHC
A9P249_______________PNCGHSFHVECIDMWFRSHSTCPVCRTGAQ-------PEQPVLESARVEQVSVTIPGPITSGFHDNPNLEQDQTAGC

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain