SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene33019

Length: 2216 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

>sp_v1.1_unigene33019
CGTCGTGACCTTGGCTGTCACTCAATCACCGACCAGAATCAGAAGAACGCGCTCTAACATTCCTCCGAATAACACTTCATGATTGAACCTGAAAAACAAATTCCTATTCTCTCTGAATTCTCAAATTGAGAGAGATATTCGCGAACATCCTCAGCACATTCATTGGAACAGGGCGTTCTAGATGTTACCGACTACATGTCCCAAAGATGCTCATAAACAACTGATTTTCTGCCAATAACGACCAAGGTGTTTTTGCTCTCGATTTCCCGTGCTTGATGAGCTTCAGTTTATAGAATGTGACACTCCAGATTGCTGAGACGCGATCCTCTCTGCACGCTAAGTTTTCAGGGCAAGAAGAAGAAAAAGGATACGCCATGGGCTCTACAGGCGGTGCCGAGAACAAGGCCAACGATTATTTAACAGCAGGGTGGACAGTCCCTCGAGTGTTTGGGGGAATACTTGTGTCAGCAGCCGTGCTGGGCGTGGTTTTAGCTCCCGATATTCTGTCATCATTCCTTCCCTTCTCCAAGCGCAAAAGCAAGAAGAAGCCCGTGAGAGTGTACATGGATGGCTGCTTCGACATGATGCATTACGGCCACTGCAACGCCCTCAGGCAGGCTCGTGCCCTCGGAGACGAATTGGTCGTCGGCGTCGTCAGTGACGACGAGATAATATACAACAAAGGCCCCCCTGTCATGTCCCTGGACGAAAGGATGGTGATGGTAAGTGCTGTAAAGTGGGTGGATGAGGTTATTGCAAATGCTCCATATGCAATCAATGAAGAATTTATGAACAAATTATTCAATGAGTACAATATTGATTATATTATACATGGAGATGATCCATGTTTACTTCCAGATGGAAGTGATGCTTATGCCCTTGCTAAGAAGGCTGGACGATACAAGCAGATAAAGCGGACTGAAGGTGTATCAAGCACTGATATTGTTGGTCGGATGCTGCTTTGTGTTAGAGACAGACCCAGTAGTGACAATCATACTCATGCTTCTTTACAGCGGCAATTTAGCCATGGGCACAGTCACAAGGCTGAGAGTAGGGGTGCTTCCAGTGGAACTCGAATTTCTCATTTTCTCCCAACATCACGACGCATTGTGCAGTTTTCAAATGGAAAGGGTCCTGGACCAGATGCACGCATTGTCTACATTGATGGTGCATTTGATCTCTTTCATGCTGGACATGTGGAGATTCTAAAACGTGCTCGGGAGCTCGGGGACTTTTTACTTGTTGGTATCCATACAGATCAAACTGTCAGTGACCACAGAGGGCTTCATCATCCTATAATGAATCTCCACGAACGCAGCCTTAGTGTGTTAGCTTGTCGATATGTGGATGAGGTTATAATTGGCGCTCCATGGGAGGTCACAAAAGATATGATTATGACCTTCAATATTTCTTTGGTTGTTCATGGGACGGTTGCTGAGAATGATGGCGTGAATGTGGAAGTCGATCCATACAAAGCTGCAAAATCTATGGGAATATTTAAGATAATAGAGAGTCCATTGGACATAACAACTACTCACAATTATCAAAAGAATTGTAGCTAATCATGAAGCTTATCAGAAACGCAATGAGAAAAAAGTGGAAAGCGAGAAGAGGTATTATGAAGGTAAAACACATGTTAGTGGCGATTAAGTCTTTGATCTATGTTCTGCACCTGAAATCTGAAATTTCATGCTGAATAATAATGTCTTTGGCATACATTTAACATCGTGATCCTCCATGATTATGCCTACCCATTTAATGGGTGTATCTTTGGAGTATACATACAATTTGATGCCAGAGGTTTATTTCACTGGGCTCCATTTTGTCTACTTCCTATTATTTGTGTTTGAACCTATATTGCATGGGTATGGCTGGATACGGGTGCGGGTATGGCCACGGATGGAAATGTTTTAAACTATGGAGATCATCAGGATGCGGGCATTACAGGTATGGGGATGAATGGAAGATGATAGAGCACCCATGCAACTAGGGTTTGAACTAATGGCTCATGGTTGTGAACAAATTTTGTTGTGGTTGTATAATTTTTTCGTCCTTTTTATTTAATCTGAAGAGTAACCTCCACAACGTTTAAGTATTGGAGCTCCATAATTGTGTTTTAGAACTGTTTGTATTGTATTGCAATTTGTCAACAATCTTTTTTTATTTCAGGCAAAGTGGAGTTGTAAATCTGTACTTGATTGTGTTCAATATACGCC

Ace file of the UniGene sp_v1.1_unigene33019

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	similar to Os11g0123400; K00967 ethanolamine-phosphate cytidylyltransferase [EC:2.7.7.14]	-	-	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	41%
Blast2go	protein	-	-	87%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ethanolamine-phosphate cytidylyltransferase.	EC:2.7.7.14	-	0.0	87%

Source	KEGGs	Term	Identity
Blast2go	Phosphonate and phosphinate metabolism	00440	87%
Blast2go	Glycerophospholipid metabolism	00564	87%
Blast2go	Metabolic pathways	01100	87%

Source	ECs	Term	Type	e value	Identity
AutoFact	Ethanolamine-phosphate cytidylyltransferase.	EC:2.7.7.14	-	0.0	83%

Source	KEGGs	Term	Identity
AutoFact	Phosphonate and phosphinate metabolism	00440	83%
AutoFact	Glycerophospholipid metabolism	00564	83%
AutoFact	Metabolic pathways	01100	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	ethanolamine-phosphate cytidylyltransferase activity	GO:0004306	Molecular Function	0.0	87%
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Blast2go	Cytidylyltransferase	IPR004820	-	87%
Blast2go	Cytidyltransferase-related	IPR004821	-	87%
Blast2go	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	87%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AEI5

Fln msg: your sequence is longer than subject: 396 - 305

Fln protein: MGSTGGAENKANDYLTAGWTVPRVFGGILVSAAVLGVVLAPDILSSFLPFSKRKSKKKPVRVYMDGCFDMMHYGHCNALRQARALGDELVVGVVSDDEIIYNKGPPVMSLDERMVMVSAVKWVDEVIANAPYAINEEFMNKLFNEYNIDYIIHGDDPCLLPDGSDAYALAKKAGRYKQIKRTEGVSSTDIVGRMLLCVRDRPSSDNHTHASLQRQFSHGHSHKAESRGASSGTRISHFLPTSRRIVQFSNGKGPGPDARIVYIDGAFDLFHAGHVEILKRARELGDFLLVGIHTDQTVSDHRGLHHPIMNLHERSLSVLACRYVDEVIIGAPWEVTKDMIMTFNISLVVHGTVAENDGVNVEVDPYKAAKSMGIFKIIESPLDITTTHNYQKNCS*

Protein Length: 397

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCACCGACCAGAATCAGAAGAACGCGCTCTAACATTCCTCCGAATAACACTTCATGATTGAACCTGAAAAACAAATTCCTATTCTCTCTGAATTCTCAAATTGAGAGAGATATTCGCGAACATCCTCAGCACATTCATTGGAACAGGGCGTTCTAGATGTTACCGACTACATGTCCCAAAGATGCTCATAAACAACTGATTTTCTGCCAATAACGACCAAGGTGTTTTTGCTCTCGATTTCCCGTGCTTGATGAGCTTCAGTTTATAGAATGTGACACTCCAGATTGCTGAGACGCGATCCTCTCTGCACGCTAAGTTTTCAGGGCAAGAAGAAGAAAAAGGATACGCC_-_ATGGGCTCTACAGGCGGTGCCGAGAACAAGGCCAACGATTATTTAACAGCAGGGTGGACAGTCCCTCGAGTGTTTGGGGGAATACTTGTGTCAGCAGCCGTGCTGGGCGTGGTTTTAGCTCCCGATATTCTGTCATCATTCCTTCCCTTCTCCAAGCGCAAAAGCAAGAAGAAGCCCGTGAGAGTGTACATGGATGGCTGCTTCGACATGATGCATTACGGCCACTGCAACGCCCTCAGGCAGGCTCGTGCCCTCGGAGACGAATTGGTCGTCGGCGTCGTCAGTGACGACGAGATAATATACAACAAAGGCCCCCCTGTCATGTCCCTGGACGAAAGGATGGTGATGGTAAGTGCTGTAAAGTGGGTGGATGAGGTTATTGCAAATGCTCCATATGCAATCAATGAAGAATTTATGAACAAATTATTCAATGAGTACAATATTGATTATATTATACATGGAGATGATCCATGTTTACTTCCAGATGGAAGTGATGCTTATGCCCTTGCTAAGAAGGCTGGACGATACAAGCAGATAAAGCGGACTGAAGGTGTATCAAGCACTGATATTGTTGGTCGGATGCTGCTTTGTGTTAGAGACAGACCCAGTAGTGACAATCATACTCATGCTTCTTTACAGCGGCAATTTAGCCATGGGCACAGTCACAAGGCTGAGAGTAGGGGTGCTTCCAGTGGAACTCGAATTTCTCATTTTCTCCCAACATCACGACGCATTGTGCAGTTTTCAAATGGAAAGGGTCCTGGACCAGATGCACGCATTGTCTACATTGATGGTGCATTTGATCTCTTTCATGCTGGACATGTGGAGATTCTAAAACGTGCTCGGGAGCTCGGGGACTTTTTACTTGTTGGTATCCATACAGATCAAACTGTCAGTGACCACAGAGGGCTTCATCATCCTATAATGAATCTCCACGAACGCAGCCTTAGTGTGTTAGCTTGTCGATATGTGGATGAGGTTATAATTGGCGCTCCATGGGAGGTCACAAAAGATATGATTATGACCTTCAATATTTCTTTGGTTGTTCATGGGACGGTTGCTGAGAATGATGGCGTGAATGTGGAAGTCGATCCATACAAAGCTGCAAAATCTATGGGAATATTTAAGATAATAGAGAGTCCATTGGACATAACAACTACTCACAATTATCAAAAGAATTGTAGCTAA___TCATGAAGCTTATCAGAAACGCAATGAGAAAAAAGTGGAAAGCGAGAAGAGGTATTATGAAGGTAAAACACATGTTAGTGGCGATTAAGTCTTTGATCTATGTTCTGCACCTGAAATCTGAAATTTCATGCTGAATAATAATGTCTTTGGCATACATTTAACATCGTGATCCTCCATGATTATGCCTACCCATTTAATGGGTGTATCTTTGGAGTATACATACAATTTGATGCCAGAGGTTTATTTCACTGGGCTCCATTTTGTCTACTTCCTATTATTTGTGTTTGAACCTATATTGCATGGGTATGGCTGGATACGGGTGCGGGTATGGCCACGGATGGAAATGTTTTAAACTATGGAGATCATCAGGATGCGGGCATTACAGGTATGGGGATGAATGGAAGATGATAGAGCACCCATGCAACTAGGGTTTGAACTAATGGCTCATGGTTGTGAACAAATTTTGTTGTGGTTGTATAATTTTTTCGTCCTTTTTATTTAATCTGAAGAGTAACCTCCACAACGTTTAAGTATTGGAGCTCCATAATTGTGTTTTAGAACTGTTTGTATTGTATTGCAATTTGTCAACAATCTTTTTTTATTTCAGGCAAAGTGGAGTTGTAAATCTGTACTTGATTGTGTTCAATATACGCC

Fln Alignment:

sp_v1.1_unigene33019___YMDGCFDMMHYGHCNALRQARAL--GDELVVGVVSDDEIIYNKGPPVMSLDERMVMVSAVKWVDEVIANAPYAINEEFMNKLFNEYNIDYIIHGDDPCLLPD----GSDAYALAKKAGRYKQIKRTEGVSSTDIVGRML
D5AEI5_______________YADGIYDLFHFGHARALEQAKKAFPNTYLLVGCCNDAVTHMYKGKTVMTEAERYESLRHCRWVDEVIPDAPWVITPEFIDK----YQIDYVAH--DPLPYADASGAGKDVYEYVKSIGKFKETKRTEGISTSDIIMRIL

SNPs (tot: 54)

Position	A %	C %	G %	T %	Probability
130	83			16	0.994513
132	83			16	0.994512
227	87		12		0.992554
228	87			12	0.992554
234		12		87	0.992554
235		30		70	1.0
236			20	80	0.999996
242	20	70	10		0.999998
244	70	20		10	0.999998
245	70		10	20	0.999998
247	70	10	20		0.999998
248	80		20		0.999996
252	70			30	1.0
254	30	70			1.0
255	80	20			0.999996
256	80			20	0.999996
257		20	80		0.999996
258	20		80		0.999996
690		33		66	1.0
691	77		22		0.999999
694	75		25		1.0
695		75		25	1.0
696	75		25		1.0
699	75	25			1.0
700	75			25	1.0
701	75			25	1.0
706		71	28		1.0
707		71		28	1.0
709	28	71			1.0
713		28		71	1.0
714	28	71			1.0
1024			85	14	0.993533
1025			14	14	0.984337
1069	16	83			0.994512
1071			83	16	0.994512
1072	83			16	0.994512
1074	83		16		0.994512
1076			16	83	0.994512
1077	83		16		0.994512
1080			83	16	0.994512
1081			83	16	0.994513
1083	16		83		0.994512
1246		85		14	0.993538
1297	85		14		0.993533
1304	50		50		1.0
1909		7	92		0.999664
1912	92		7		0.999664
1920	92	7			0.999664
1922	92		7		0.999664
1923		92		7	0.999664
1924		7	92		0.999664
1925	7		92		0.999664
1926		7	92		0.999664
2055		28	71		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain