SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32996

Length: 250 nt

Origin of reads: Biogeco_1 Uma

UniGene Fasta

>sp_v1.1_unigene32996
ATGGGGGCCGCAAATTATGCGCTTGGCACACTAGGGGGGAATCCTCATAAGACGACTGGAATAATTGAGCTTGGTGGGGCATCTGCCCAGGTCACGTTTGTGCCAGAAAACATACCACCACCTGAATTTTTACAAACAGTAGAATTGGGGGGAGTTACCTATAAACTGTATAGTCATAGCTTGCTTCATTTTGGTCAGGAAGCGGCTTGGGATTCACTATTTGAATTGGTTGTTTCAGGAGACATAAAGT

Ace file of the UniGene sp_v1.1_unigene32996

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	nucleoside phosphatase family protein / GDA1/CD39 family protein	-	-	1.0e-21	65%
FL-Next	sp=Nucleoside-triphosphatase; Pisum sativum (Garden pea).	-	-	0.0	40%
Blast2go	protein	-	-	3.18547e-28	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	3.18547e-28	77%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Nucleoside phosphatase GDA1/CD39	IPR000407	-	3.18547e-28	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P52914

Fln msg: Distance to subject end: 190 aas, your sequence is shorter than subject: 83 - 455

Fln protein: MGAANYALGTLGGNPHKTTGIIELGGASAQVTFVPENIPPPEFLQTVELGGVTYKLYSHSLLHFGQEAAWDSLFELVVSGDIK

Protein Length: 84

Fln nts: ATGGGGGCCGCAAATTATGCGCTTGGCACACTAGGGGGGAATCCTCATAAGACGACTGGAATAATTGAGCTTGGTGGGGCATCTGCCCAGGTCACGTTTGTGCCAGAAAACATACCACCACCTGAATTTTTACAAACAGTAGAATTGGGGGGAGTTACCTATAAACTGTATAGTCATAGCTTGCTTCATTTTGGTCAGGAAGCGGCTTGGGATTCACTATTTGAATTGGTTGTTTCAGGAGACATAAAGT

Fln Alignment:

sp_v1.1_unigene32996___NYALGTLGGNPHKTTGIIELGGASAQVTF-----VPENIP-----PPEFLQTVELGGVTYKLYSHSLLHFGQEAAWDSLFEL
P52914_______________NYALGNLGKKYTKTVGVIDLGGGSVQMAYAVSKKTAKNAPKVADGDDPYIKKVVLKGIPYDLYVHSYLHFGREASRAEILKL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
87		80	20		0.995497
153	14		85		0.993541
154			85	14	0.993541
157	85		14		0.993539
241	80			20	0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain