SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32946

Length: 1291 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32946

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF3584 domain containing protein	-	-	0.0001	25%
FL-Next	tr=Putative uncharacterized protein; Ricinus communis (Castor bean).	-	-	0.0	37%
Blast2go	unnamed protein product [Vitis vinifera]	-	-	7.07459e-26	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9T747

Fln msg: your sequence is longer than subject: 341 - 283

Fln protein: MIVWSMDVTLFSQAPTSIACQFSVNCEPIPRLQTRNIGVKVGDSRRGWGIKKSLVTRFSATDNVAQAQTQAQSTAEQLKAQLDALQKEAEEARVRANRARSRFMRLTEAVDKLKLQAAASVKAGKESSAREMLLEKKKVLQALENCKNRVELFDELSTKLGEAISVKETQLIKP*CLHVLTWILKRD*GTSQSCLFQRSCIVCQRKFSRTFQFGSRQQGY*YG*SSKNRCE*CW*KRQEDKSESRHQGPFGKREKIEDDYFHAIFKGIDSYQSFLIYLDEQVAEMESNLHTFLKFSSLILEDEVERSTNQKVKTTVEILEALKDVRTRIAAAMGSGETSL*

Protein Length: 342

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTAGTTTCGAAATCCCCTTCCTAGTTACTAAAAATTCAGGTAGGTA_-_ATGATAGTGTGGAGTATGGATGTTACACTATTTTCTCAGGCGCCAACCTCGATTGCATGCCAATTCAGTGTAAACTGCGAACCTATCCCACGTCTTCAAACAAGAAACATCGGCGTCAAGGTTGGGGATTCGAGGAGGGGTTGGGGAATTAAAAAGAGTTTGGTCACTCGATTCTCAGCTACCGACAATGTCGCGCAAGCGCAAACGCAAGCGCAGTCGACTGCAGAGCAGCTTAAAGCCCAACTGGATGCTCTTCAAAAGGAAGCCGAGGAAGCAAGAGTCAGAGCAAACCGTGCAAGATCTCGATTTATGAGGTTAACAGAAGCTGTGGACAAACTTAAACTCCAGGCTGCTGCTAGTGTAAAGGCTGGCAAGGAATCTTCTGCAAGAGAAATGCTTCTGGAAAAAAAGAAAGTGCTGCAAGCTTTGGAGAATTGTAAAAACCGTGTGGAGCTCTTTGATGAGCTTTCGACAAAGCTTGGTGAGGCAATCTCAGTAAAGGAAACCCAATTAATTAAACCATAATGTCTACACGTTTTGACATGGATATTGAAAAGAGACTGAGGGACCAGTCAGAGTTGTCTCTTCCAAAGAAGTTGCATCGTGTGCCAGAGAAAATTTAGTAGAACATTTCAGTTTGGATCCAGGCAGCAAGGATACTAATATGGATGAAGTTCTAAGAACCGCTGTGAATGATGCTGGTGAAAACGGCAAGAAGATAAATCAGAAAGTAGACACCAAGGGCCTTTTGGCAAACGAGAGAAGATCGAAGATGATTACTTCCATGCAATTTTCAAAGGGATTGACTCATATCAGAGCTTCTTAATTTACCTTGACGAACAGGTAGCTGAAATGGAGTCAAATTTGCATACATTTCTCAAATTTTCAAGTTTGATACTTGAGGATGAAGTAGAGAGATCGACAAATCAAAAGGTGAAGACAACAGTGGAAATCCTCGAAGCATTAAAAGATGTGAGAACGAGAATTGCAGCTGCAATGGGAAGTGGAGAAACATCTTTATGA___ATGTTTGAGAGCTCACGTCTTGATTCAGTGAACACATTCCCAGCATGAAAATACACTTAAAATGTTCATGTCCTTCAAAGAGTCTTTCTGAGTAGACTCAGAATATGGACTTGATAATTGTTTCTATGAGTATTATCTGTTTAAATTCAACTGTGATGTGTTTCCTGAGCCAAACCAATTGCATCCTGATCTACC

Fln Alignment:

sp_v1.1_unigene32946___EQLKAQLDALQKXXXXXXXXXXXXXXXXXXLTEAVDKLKLQAAASVKAGKESSAREMLLEKKKVLQALENCKNRVELFDELSTKLGEAISVKETQLIKP*CLHVLTWILKRD*GTSQSCLFQRSCIVCQRKFSRTFQFGSRQQGY*YG*SSKNRCE*CW*KRQEDKSESRHQGPFGKREKIEDDYFHAIFKGIDSYQSFLIYLDEQVAEMESNLHTFLKFSSLILEDEVERSTNQKVKTTVEILEALKDVRTRIAAAM-GSGET
B9T747_______________EQLRTQLDQLHVESDTTRAKANSARLRFMRLSEAAEKLKRQAAISIHSGKENEARELLFQKKKVMQAMERSKSRIELLDQLSAKLNEAISIKESLLIGNIALDLEN--DSKDASGPVRIISPKEGIVDDKDEDK--YFSSVPNG------SSNQDLQLYSDDEASRQADKELGSLSNDVGIEDSMVTGLV-GISSYEDFLEHLDLQLNRIEAELVTILNVSALVINDE-DKPKNSKVQQTIELLDSVRSIRNRIGRIIQGKAET

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
66		33		66	0.997452
67	33	66			0.997452
81		50		50	1.0
95	50		50		1.0
169		33		66	1.0
183	50		50		1.0
202	50		50		1.0
220	25		75		0.996486
221	25		75		0.99649
251	14			85	0.993533
252		85		14	0.993533
253	85		14		0.993533
255		85	14		0.993533
256			14	85	0.993533
336	66		33		1.0
459	50	50			1.0
481	16		83		0.994512
684	66		33		0.997452
690	33			66	0.997452
691		33	66		0.997452
693		66		33	0.997452
694	66			33	0.997452
698	66			33	0.997452
705		33		66	0.997457
706	33			66	0.997457
1017	66		33		0.997476
1030	80		20		0.995493
1031	80			20	0.995493
1037	20		80		0.995493
1038	80	20			0.995493
1039	80	20			0.995493
1040	80			20	0.995493
1043		80	20		0.995493
1047		80		20	0.995493
1048	20	20	60		0.99255
1050	80	20			0.995493
1051			80	20	0.995493
1081			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain