SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32920

Length: 604 nt

Origin of reads: Uagpf

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32920

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2x PHD domain containing protein	-	-	6.0e-09	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	unknown [Picea sitchensis]	-	-	0.0	90%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, PHD-type	IPR001965	-	90%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	90%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	90%
Blast2go	Zinc finger, PHD-type, conserved site	IPR019786	-	90%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	90%

Full-Lengther Next Prediction

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
103	50			50	1.0
104		50	50		1.0
281	20			80	0.995497
283		20	80		0.995499
286		20		80	0.995498
289		75		25	0.996473
291		75	25		0.996473
296		33		66	0.997452
297	33		66		0.997452
366		33		66	0.997464
370	66		33		0.997471
374	33			66	0.997467
375		33		66	0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain