SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32861

Length: 472 nt

Origin of reads: Biogeco_1

UniGene Fasta

>sp_v1.1_unigene32861
CGTCGTGACCTTGGCTGTCATTGGAGGGGTAGCATTATTCGAAGTGGGGAGCAGGAGCAGGAGCAGTACCAGGTGACATGGGGGAAGAAATGTATGGAAAACATGAGAAGAAAAAAGAGGGAGAGCTGTATGCTCTCCTACACATATCGCCTCAAGCTTCAGATGAAGAAATCAGAAAAGCGTATCGACAGTGGGCACAGATTTATCATCCAGACAAGTATCAGAGTCTCCAGATGAAAGACATTGCCACAGAGAACTTTCAAAAAATACGTGAAGCATATGAAATTTTGAGTGATGCACACAAGAGGCAAATTTATGATATCTATGGTATGGAAGGTTTAACATCAGGTTTGGAGCTTGGTCAAAGACTGAAAACACCTGAAGAGATAAGGGAGGAGTTTGAGAGGGTGAAACAACGGCGAGAGGAGGAGAAATTTGCAGCTCATGTGCGGCCTTCGGGGTCTTTTCTGGC

Ace file of the UniGene sp_v1.1_unigene32861

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os10g0507800 protein (Fragment) n=3 Tax=Oryza sativa RepID=Q0IWI3_ORYSJ	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	46%
Blast2go	protein	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	0.0	86%

Source	InterPros	Term	Type	Identity
Blast2go	Heat shock protein DnaJ, N-terminal	IPR001623	-	86%
Blast2go	Heat shock protein DnaJ	IPR003095	-	86%
Blast2go	Heat shock protein DnaJ, conserved site	IPR018253	-	86%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LN93

Fln msg: Distance to subject end: 64 aas, your sequence is shorter than subject: 131 - 182

Fln protein: MGEEMYGKHEKKKEGELYALLHISPQASDEEIRKAYRQWAQIYHPDKYQSLQMKDIATENFQKIREAYEILSDAHKRQIYDIYGMEGLTSGLELGQRLKTPEEIREEFERVKQRREEEKFAAHVRPSGSFL

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCATTGGAGGGGTAGCATTATTCGAAGTGGGGAGCAGGAGCAGGAGCAGTACCAGGTGAC_-_ATGGGGGAAGAAATGTATGGAAAACATGAGAAGAAAAAAGAGGGAGAGCTGTATGCTCTCCTACACATATCGCCTCAAGCTTCAGATGAAGAAATCAGAAAAGCGTATCGACAGTGGGCACAGATTTATCATCCAGACAAGTATCAGAGTCTCCAGATGAAAGACATTGCCACAGAGAACTTTCAAAAAATACGTGAAGCATATGAAATTTTGAGTGATGCACACAAGAGGCAAATTTATGATATCTATGGTATGGAAGGTTTAACATCAGGTTTGGAGCTTGGTCAAAGACTGAAAACACCTGAAGAGATAAGGGAGGAGTTTGAGAGGGTGAAACAACGGCGAGAGGAGGAGAAATTTGCAGCTCATGTGCGGCCTTCGGGGTCTTTTCTGGC

Fln Alignment:

sp_v1.1_unigene32861___ELYALLHISPQASDEEIRKAYRQWAQIYHPDKYQSLQMKDIATENFQKIREAYEILSDAHKRQIYDIYGMEGL
B8LN93_______________DYYIILNVGRRASEDDLKKAYRKLAMKWHPDKNPN--NKKEAEAKFKQISEAYEVLSDPQKRAIYDQYGEEGL

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
258			80	20	0.995493
263		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain