SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32860

Length: 1856 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32860

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	serine carboxypeptidase, putative (EC:3.4.16.6); K13289 cathepsin A [EC:3.4.16.5]	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	protein	-	-	76%

Source	ECs	Term	Type	e value	Identity
AutoFact	Carboxypeptidase C.	EC:3.4.16.5	-	0.0	63%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	76%
Blast2go	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH4

Fln msg: Overlapping hits, possible frame ERROR between 568 and 459,

Fln protein: MSRCEVYLGLLLVLVLLLTLQSTATWEESNEIDWRNEQARDKITELPGLPSNANFAQYSGYITVDKNAGRALFYWLIEATEDPSSKPLVLWLNGGPGCSSVAYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSGVGFSYTNTSSDISKSGDKRTAEDSHTFLLNWLERFPQYKNREFYIAGESYGGHYVPQLAQVIYRHNMDLENPAINLKGYMVGNGVTDDFHDRVGIFQFMWSHGLISDNTFRMLNVFCDFSSLVHPSSLCEKALEYADVEMGQIDPYSIYTPPCLNSTGTYGKQLKKVKSWRHLFGGYDPCTEKYSKIYFNLPEVQKALHANVTGIPYEWTTCSDAVGENWGDSPRSVLSIYRELIKAGLRIWMFSGDTDAVIPVTSTRNSINALKLRTVTHWHPWYDNGQVGGWTQVYEGLTFVTIRGAGHEVPLHEPEKAFVLFKSFLEGKPMPVSTNLVDTL*

Protein Length: 479

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGTTTTAGAATTTAATACCTTCTGCCCCCTGTCAGATTATAAAACGGCCTATTCGTCGTGACCTTGGCTGTCACTCATATTATCGTTACAATCATTTTGGAGGAGCATTGGCAGCAGATTTACA_-_ATGAGCAGGTGCGAAGTTTATCTGGGATTGCTTCTGGTTCTGGTTCTGCTTTTGACGTTGCAATCCACAGCCACATGGGAGGAGAGTAATGAGATTGATTGGAGAAATGAGCAGGCCAGGGACAAAATCACTGAACTCCCTGGTCTGCCCTCAAATGCGAACTTTGCCCAATATTCTGGCTACATAACTGTAGACAAAAACGCTGGCAGAGCCCTTTTCTACTGGCTCATTGAAGCCACAGAAGACCCATCTTCTAAGCCTCTGGTCTTGTGGTTGAATGGAGGTCCTGGGTGTTCTTCTGTGGCATATxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTCTGGGGTTGGTTTTTCCTACACCAACACTTCTTCAGATATATCCAAGTCTGGAGATAAACGAACTGCTGAAGATTCACACACCTTCTTGCTCAACTGGTTGGAAAGATTCCCTCAATATAAAAATAGGGAGTTTTACATTGCAGGAGAGAGCTATGGAGGGCATTACGTTCCTCAGTTAGCTCAAGTCATTTACAGACACAACATGGACCTTGAAAATCCAGCCATTAATCTGAAGGGATATATGGTGGGCAATGGAGTTACAGATGATTTCCATGATCGTGTAGGAATTTTTCAATTTATGTGGTCTCATGGTCTCATATCCGACAACACTTTCCGAATGCTCAACGTTTTCTGTGATTTTTCGTCTCTTGTGCACCCATCATCTCTATGTGAAAAGGCATTAGAGTATGCCGACGTGGAAATGGGGCAAATCGATCCATACAGCATCTACACCCCTCCTTGCTTGAACAGTACTGGAACATATGGAAAACAATTAAAAAAAGTGAAGTCATGGAGGCATCTGTTTGGGGGATATGACCCTTGCACTGAAAAATATTCCAAAATTTACTTCAATCTACCTGAGGTACAAAAGGCTCTTCACGCCAATGTTACAGGAATTCCTTATGAATGGACGACTTGCAGTGATGCAGTTGGTGAAAACTGGGGAGACTCTCCTAGATCTGTGCTATCAATTTACCGAGAGCTTATAAAAGCTGGACTACGCATTTGGATGTTCAGTGGAGATACAGATGCAGTGATTCCTGTAACATCTACCAGAAATTCTATAAATGCGCTTAAGCTTCGCACGGTTACTCACTGGCATCCTTGGTATGACAATGGGCAGGTGGGAGGATGGACTCAAGTATACGAAGGGCTGACATTTGTAACAATTAGAGGAGCAGGCCATGAGGTTCCATTGCATGAACCTGAAAAGGCCTTCGTACTCTTCAAGTCATTCTTAGAAGGAAAACCGATGCCAGTCTCCACAAACCTTGTAGATACTTTATAG___TGATTGTTAAAGCCAGAGGAGATTTTAGCACCTATTTCTAAATTCATTTCATTCATATATTACGTGGGAGTTCTGAAATCAAGGTGCTTGTAGGAAAACAACAATTCAGCATTGATTATGTCATCCAAATTATGAATTGTCCATGATGTAGAGGTCCAGGATTGATTTGGTATCTTTGTTATTATTACTTTGTATGTTGAAATTGTCATAAAGCAACAGTGATATCATATATAAATATTCAATGCAAGGAGACCATGCATTTGTAAACAACAAAAA

Fln Alignment:

sp_v1.1_unigene32860___STATWEESNEIDWRNEQARDKITELPGLPSNANFAQYSGYITVDKNAGRALFYWLIEATEDPSSKPLVLWLNGGPGCSSVAYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx---SGVGFSYTNTSSDISKSGDKRTAEDSHTFLLNWLERFPQYKNREFYIAGESYGGHYVPQLAQVIYRHNMDLENPAINLKGYMVGNGVTDDFHDRVGIFQFMWSHGLISDNTFRMLNVFCDFSSLVHPSSLCEKALEYADVEMGQIDPYSIYTPPCLNSTGTYGKQLKKVKSWRHLFGGYDPCTEKYSKIYFNLPEVQKALHANVTGIPYEWTTCSDAVGENWGDSPRSVLSIYRELIKAGLRIWMFSGDTDAVIPVTSTRNSINALKLRTVTHWHPWYDNGQVGGWTQVYEGLTFVTIRGAGHEVPLHEPEKAFVLFKSFLEGKPMPVSTNLVDTL
A9NUH4_______________ATSTWEESNERDWRNEQAKDRITQLPGQPSNVNFAQYSGYITVDNNAGRALFYWLIEATENPSSKPLVLWLNGGPGCSSVAYxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDSPAGVGFSYTNTSSDISQSGDRRT-------------------------------GHYVPQLAQVIYKRSKGLANPVINLKGYMVGNGVTDDFHDIVGIFEYMWSHGLISDNTYRLLNVLCDFSSLLHPSALCNMALDKADVEMGEIDPYSIYTPPCLNSTGTYRKQHRKRYPWRHLFGEYDPCTEKHSEIYFNLPEVQKALHANVTGIPYRWTTCSDAVADHWGDSPRSMLPIYQELIKAGLRIWMFSGDTDAVIPVTSTRYSINALKLPTVTQWHPWYDNGQVGGWTQVYEGLTFVTVRGAGHEVPLHEPRKAFTVFESFLEGKPMPVSPKLVDTL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
426	16		83		0.999991
455		80	20		0.999996
910		90		10	0.90298
934	88			11	0.991528
935		11		88	0.991528
992		83		16	0.994512
1197		83		16	0.999991
1690	35		50		1.0
1863	75		25		0.996475

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain