SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32852

Length: 559 nt

Origin of reads: Biogeco_1 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene32852
CGTCGTGACCTTGGCTGTCACTCAAATTCAGCAACTTGAGCATGTAAATTTGGAGTTACAATCCGAGATTCAGAAATTGAAGGAACATCATACCAGTAAGTCTGGTATAGAGGAATTGGAGATTCAGTTATCAGTGCTTAGTCAGGAAACCCATACATTGAGATCCTCAAAGCATGAGCTTGAGATGCAAATGTCAAACTTACAAATGGAGAAAGTGAACCTGGAACATAAGCTGGAGATCACACAGGAGGAAAGCAAGGCTGCTAGAGTACACTTGGATGAGCTTGGTCGAGAGCTGGCAAGGCTAACAGTTAGCATGGAATCCCAAATGTCTGATAAAAGGATTATTGAAAAGAAAGCCATAGAATTAGAAAGCAACAAAGAGGAACTTGAGAGTCATTTAACAGATCTTGAGGTGGAAAATGTGCAATTATCAGAACGCATATCAGGACTAGAAGCACAATTGAGGTACATAACAGAAGAGAGGGAGTCTTACAGACTAGAAGTGAAAATGCTAAATCCCATTGTACTGATCTGCAGAGTGATTTGCATAGGCTTG

Ace file of the UniGene sp_v1.1_unigene32852 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[Z] COG5059 Kinesin-like protein	-	-	7.0e-09	29%
FL-Next	Isoform 2 of Filament-like plant protein 1 OS=Arabidopsis thaliana GN=FPP1	-	-	0.0	26%
Blast2go	dna repair protein	-	-	9.75616e-31	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9CAP9-2

Fln msg: Distance to subject end: 137 aas, your sequence is shorter than subject: 186 - 629

Fln protein: VVTLAVTQIQQLEHVNLELQSEIQKLKEHHTSKSGIEELEIQLSVLSQETHTLRSSKHELEMQMSNLQMEKVNLEHKLEITQEESKAARVHLDELGRELARLTVSMESQMSDKRIIEKKAIELESNKEELESHLTDLEVENVQLSERISGLEAQLRYITEERESYRLEVKMLNPIVLICRVICIGL

Protein Length: 187

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATTCAGCAACTTGAGCATGTAAATTTGGAGTTACAATCCGAGATTCAGAAATTGAAGGAACATCATACCAGTAAGTCTGGTATAGAGGAATTGGAGATTCAGTTATCAGTGCTTAGTCAGGAAACCCATACATTGAGATCCTCAAAGCATGAGCTTGAGATGCAAATGTCAAACTTACAAATGGAGAAAGTGAACCTGGAACATAAGCTGGAGATCACACAGGAGGAAAGCAAGGCTGCTAGAGTACACTTGGATGAGCTTGGTCGAGAGCTGGCAAGGCTAACAGTTAGCATGGAATCCCAAATGTCTGATAAAAGGATTATTGAAAAGAAAGCCATAGAATTAGAAAGCAACAAAGAGGAACTTGAGAGTCATTTAACAGATCTTGAGGTGGAAAATGTGCAATTATCAGAACGCATATCAGGACTAGAAGCACAATTGAGGTACATAACAGAAGAGAGGGAGTCTTACAGACTAGAAGTGAAAATGCTAAATCCCATTGTACTGATCTGCAGAGTGATTTGCATAGGCTTG

Fln Alignment:

sp_v1.1_unigene32852___TQIQQLEHVNLELQSEIQKLK-EHHTSKSGIEELEIQLSVLSQETHTLRSSKHELEMQMSNLQMEKVNLEHKLEITQEESKAARVHLD-ELGRELARLTVSMESQMSDKRIIEKKAIELES----NKEELESHL-TDLEVENVQLSERISGLEAQLRYITEERESYRLEVK
Q9CAP9-2_____________SEIEVLTSRIKELEEKLEKLEAEKHELENEVKCNREEAVVHIENSEVLTSRTKELEEKLEKLEAEKEELKSEVKCNREK---AVVHVENSLAAEIEVLTSRTKELEEQLEKLEAEKVELESEVKCNREEAVAQVENSLATEIEVLTCRIKQLEEKLEKLEVEKDELKSEVK

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
335	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain