SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32814

Length: 1383 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v1.1_unigene32814 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DNA binding protein, putative	-	-	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	96%
Blast2go	dna binding	-	-	89%

Source	InterPros	Term	Type	Identity
Blast2go	Zinc finger, PHD-type	IPR001965	-	89%
Blast2go	Zinc finger, FYVE/PHD-type	IPR011011	-	89%
Blast2go	Zinc finger, RING/FYVE/PHD-type	IPR013083	-	89%
Blast2go	Zinc finger, PHD-type, conserved site	IPR019786	-	89%
Blast2go	Zinc finger, PHD-finger	IPR019787	-	89%
Blast2go	Protein of unknown function DUF3594	IPR021998	-	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZI0

Fln msg:

Fln protein: MSMEGGYIKSMEGGSGPYNPRTVEEVFKDFKGRRAGMIKALTNDVEEFYQQCDPEKENLCLYGLPNESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVSFYFGARFGFDKNERKRLFIMINELPTIFEVVTGAAKKQSKEKTTVTNNSSSKNKSGIKPRASESQTKPSKLIPPKDEDDTLDEEEDDEHGDTLCGACGDNYASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPTCSNKRPRV*

Protein Length: 266

Fln nts: AAGCACGTCGTGACCTTGGCTGTCATGGGGAAGGCAACAGGCTGAAGGAAATACATTTGGATTTGTTTTTGGGAATTGTCCATTGCTTTTCATTCGTTCGCTTTAACCAATCTGAACAAATAGATTACAAGCCCAGGAGCCGGAGGACTCATAACCAGCTCTATTTCTTTTCTGCATTTCACAGCCAGTGCAGGCAAATAAAATATATACAGAGACATC_-_ATGTCCATGGAAGGAGGGTATATCAAATCAATGGAAGGAGGGTCGGGGCCTTACAATCCGCGCACGGTGGAAGAAGTCTTCAAGGATTTCAAGGGCCGAAGAGCCGGAATGATTAAGGCCCTCACCAATGATGTGGAAGAGTTTTACCAACAATGTGATCCGGAGAAAGAGAACTTGTGTCTTTATGGGTTGCCAAATGAGTCATGGGAAGTTAATCTTCCAGCGGAAGAGGTACCACCAGAGCTTCCAGAGCCAGCTCTGGGAATTAACTTTGCGCGGGATGGAATGCAAGAAAAAGATTGGTTATCTTTGGTTGCTGTTCATAGTGATGCTTGGCTGCTGGCTGTTTCGTTCTACTTTGGTGCAAGATTTGGGTTCGACAAGAATGAAAGGAAAAGGCTTTTTATCATGATCAATGAACTTCCAACTATTTTTGAGGTTGTTACTGGAGCTGCAAAAAAGCAATCAAAAGAAAAAACTACTGTAACCAACAACAGTAGCAGCAAGAACAAGTCTGGTATAAAGCCCCGAGCATCTGAATCTCAAACAAAGCCATCAAAGTTAATACCACCTAAAGATGAGGATGATACGTTGGATGAAGAGGAAGACGATGAACATGGTGACACACTTTGTGGAGCTTGTGGTGACAATTATGCCTCTGATGAGTTTTGGATCTGTTGTGATATGTGTGAGAAATGGTTCCATGGCAAGTGTGTTAAGATTACTCCTGCGAGAGCTGAACACATTAAGCATTATAAATGTCCAACATGCAGCAACAAAAGGCCCCGAGTTTAA___TGGATGGCCGAGGGGAACTTTAATTCAACTTAACAGGTGATGACTATCTCTGATGTTTCTACCTAGCGGTTTCGGATGCAGAAGTGTCTTCAGCCCTTGTGGTTTGTTCCTTGCACTTGGAAGGCTTCCAATTAAGCTCTAGGCTGTCGCAAGCTGAGACCTGTTGGAGGCGGTCAGTTTTGTATGCAGTATCTGTACGAATATTGGGCTGGCTGGTTGTTTAATTTTCTTGTAAGACTCAAGGCTTAAATCTTTCAAGTTTTAGATCTCCATATACCTGAGCCATTGGAAACTTTCTATTTAAAGAGTTAAGTCTTGTGCGATATTTGTTTTGAATATTGTTGATCTCTAATTCTGTTTTTTTTTTAC

Fln Alignment:

sp_v1.1_unigene32814___MEGGYIKSMEGGSGPYNPRTVEEVFKDFKGRRAGMIKALTNDVEEFYQQCDPEKENLCLYGLPNESWXXXXXXXXXXXXXXXXXLGINFARDGMQEKDWLSLVAVHSDAWLLAVSFYFGARFGFDKNERKRLFIMINELPTIFEVVTGAAKKQXXXXXXXXXXXXXXXXSGIKPRASESQTKPSKLIPPKXXXXXXXXXXXXEHGDTLCGACGDNYASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPTCSNKRPRV
A9NZI0_______________MEGGYIKPMEGGSGPYNPRTVEEVFKDFKGRRAGMIKALTNDVEEFYQQCDPEKENLCLYGLPNESWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLAVSFYFGARFGFDRNERKRLFIMINELPTIFEVVTGAAKKQSKEKSTVTNNSSSKNKSGIKPRVSESQTKSSKLPPPKDEDDTLDEEEDDEHGDTLCGACGENYASDEFWICCDMCEKWFHGKCVKITPARAEHIKHYKCPSCSNKRPRV

SNPs (tot: 56)

Position	A %	C %	G %	T %	Probability
546	3			96	0.991825
605			3	96	0.991164
611			3	96	0.991164
613		3	96		0.991164
617	7		92		1.0
623	3			96	0.99245
624		3	96		0.993037
627		3		96	0.993037
631	94		3		0.964041
634		3		96	0.993591
661		95	4		0.99692
663	4			95	0.997218
664		4	95		0.997218
665			4	95	0.997218
666		4		95	0.997218
668	4			95	0.997218
669	4			95	0.997218
671		95	4		0.997218
673	4		95		0.997218
675			4	95	0.997218
731	13		86		1.0
734	90			10	0.999898
735		90	10		0.999898
737	90		10		0.999898
738		90		10	0.999898
739		90	10		0.999898
740	10			90	0.999898
743	88		11		0.999952
744	88	11			0.999952
745	88	11			0.999952
747	12			87	0.999964
748	88		11		0.999952
752	11			88	0.999952
753		11	88		0.999952
756	88	11			0.999952
882		9		72	0.999997
1228		5	94		0.998397
1229	94	5			0.998397
1277		87		12	1.0
1291		5	95		0.997749
1292		5		95	0.997749
1293		5		95	0.997749
1296			95	5	0.997749
1328	8	5	85		0.999999
1329	94	5			0.998744
1331	94	5			0.998744
1358		13		86	1.0
1359		13		86	1.0
1362	13			86	1.0
1379		88		11	0.999937
1380		88	11		0.999937
1381	11	88			0.999937
1383	88		11		0.999937
1396	66			33	0.997476
1398	33		66		0.997476
1406		33	66		0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain