SustainPineDB

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Assembly info
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Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32797

Length: 479 nt

Origin of reads: Biogeco_1 Uma

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v1.1_unigene32797
CGTCGTGACCTTGGCTGTCACTCATTTATCCGGGACTACAAGATCTGTGGAAGGTATGTGGGTTCTGGCAGAGGTGAGCTTATTGGAGAAATTCTAAGATATCAAGGAGTCAGAGTTACATACTAGTTACTTTCTGGGCTTTTTGATGATGAAAATGGCTATGGATTATTGTTTACATTCTGTGCCAAGATGAATATTTATAGGAAGGCTGTAGATTCTTGTAATATCAGAGCCAAAGTGGAGATGCTCCTCAGCCTTATGGAGAGAGGGAAAACCCTATCTCCATGATGCACTATTCTTTATATACATGTTTATTAATTAGTAATGGAACATAAGATGATTGAAAGTGAAATGCAAGATTACTCCCTATATGTATAGAATTTTAATGGAGAACAAAAAACTAAGGCAAATTGCAATTTTACTTCTTTGATGTGTAATCTTACAAGGAATTGAAGTGAGAAACGTGATTCATATTTTCT

Ace file of the UniGene sp_v1.1_unigene32797 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	CDSP32 protein (Chloroplast Drought-induced Stress Protein of 32kDa) n=1 Tax=Solanum tuberosum RepID=O04002_SOLTU	-	-	1.0e-09	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Thioredoxin	IPR005746	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXJ3

Fln msg: your sequence is shorter than subject: 42 - 319

Fln protein: RRDLGCHSFIRDYKICGRYVGSGRGELIGEILRYQGVRVTY*

Protein Length: 43

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTATCCGGGACTACAAGATCTGTGGAAGGTATGTGGGTTCTGGCAGAGGTGAGCTTATTGGAGAAATTCTAAGATATCAAGGAGTCAGAGTTACATACTAG___TTACTTTCTGGGCTTTTTGATGATGAAAATGGCTATGGATTATTGTTTACATTCTGTGCCAAGATGAATATTTATAGGAAGGCTGTAGATTCTTGTAATATCAGAGCCAAAGTGGAGATGCTCCTCAGCCTTATGGAGAGAGGGAAAACCCTATCTCCATGATGCACTATTCTTTATATACATGTTTATTAATTAGTAATGGAACATAAGATGATTGAAAGTGAAATGCAAGATTACTCCCTATATGTATAGAATTTTAATGGAGAACAAAAAACTAAGGCAAATTGCAATTTTACTTCTTTGATGTGTAATCTTACAAGGAATTGAAGTGAGAAACGTGATTCATATTTTCT

Fln Alignment:

sp_v1.1_unigene32797___FIRDYKICGRYVGSGRGELIGEILRYQGVRVTY
A9NXJ3_______________FIRDYKICGRYVGSGKGELIGEILRYQGVRVTY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain