SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32786

Length: 1917 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32786

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Amino acid transporter, putative n=1 Tax=Ricinus communis RepID=B9T738_RICCO	-	-	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Blast2go	amino acid	-	-	80%

Source	GOs	Term	Type	e value	Identity
Blast2go	vacuole	GO:0005773	Cellular Component	0.0	80%
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	80%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Amino acid transporter, transmembrane	IPR013057	-	0.0	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACG6

Fln msg:

Fln protein: MTIVASPERRPRKQNPLSETSPLLPEKQQDDEYGVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMQVLGLILGSLLIIFVCFLTDASIDILLRFSRAGAAVSYGGVMGEAFGRIGKMLLQICVVISTLGILIVYMIIIGDVLSGTSSNGVHHAGILEELFGFHWWNGRLPILVLTIVLILAPLVSFKRVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTVQAPRLLPDIVDHTSFLKLFTVVPVIVTAYICHFNVHPIYNELEDPSEMQPIVRTSLALCSIVYIATSFFGVLLFGDQIMDDVLANFDTNLGVPYSAVLNDIVRMTYVVHLMLVFPLVFFALRLNIDGLIFPAKKPLLSDNKRFILVTTVLIGTIFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTKKDICLSLFMIFLAVVSSSIAIFSDINSMFKENEVGPPRS*

Protein Length: 464

Fln nts: ATGGGGGCGCCATCAAATGTGTCGGGTGTTGCAATAGAAGTTGCGTGCCATCTATTTGACAAATTCCTCTCCGAAAAATCGCTCGCGCAGCTCAAATTCTTCCCTCCGACCGATCCAGAAGTTTGCCCTCTCAGTCTTGAAGATCCGAGTACCCCCGATTTTTTTGGGTTCCTAGTTTTCTCTAAACA_-_ATGACAATTGTGGCCTCGCCGGAGAGGAGACCCCGAAAGCAGAACCCTTTGAGTGAAACCAGTCCCTTGCTGCCCGAGAAGCAACAGGATGACGAATATGGTGTCCATGAAGGATTCAATGGCGCCTCCTTCTCCGGCGCGGTGTTCAATTTGTCGACTACGGTGGTGGGAGCGGGAATTATGGCTCTGCCTGCTACTATGCAGGTCTTGGGATTGATCCTCGGCAGTCTCCTCATTATCTTCGTTTGCTTCTTGACGGATGCTTCAATTGACATTCTCTTAAGGTTTAGCAGGGCCGGGGCAGCGGTTTCCTATGGCGGCGTCATGGGAGAGGCCTTCGGTAGAATTGGGAAGATGCTGTTGCAGATCTGTGTTGTTATTAGCACTCTGGGCATTCTTATTGTGTATATGATTATCATAGGTGATGTGCTATCTGGAACATCATCAAATGGTGTGCATCATGCTGGTATACTTGAAGAATTGTTTGGATTTCATTGGTGGAATGGACGTCTTCCGATCCTAGTTCTCACCATAGTCCTTATTTTGGCTCCGTTGGTGTCTTTCAAGAGAGTGGATTCTTTGAAATTCACTTCTGCATTATCAGTTGCACTCGCTGTTGTATTTGTTGTGATCACGGCTGGTATTGCGATTGTAAAGTTGTTCAGTGGCACCGTCCAGGCGCCAAGATTGTTACCGGATATTGTTGATCATACTTCGTTCCTGAAGCTTTTCACTGTGGTACCAGTCATTGTGACTGCTTACATTTGTCATTTCAATGTTCATCCCATATACAATGAACTTGAGGATCCTTCAGAAATGCAACCCATTGTTCGCACATCATTGGCATTGTGCTCAATTGTATACATAGCTACAAGCTTTTTTGGTGTTCTTCTATTTGGAGATCAGATTATGGATGATGTCCTGGCCAATTTTGACACCAACTTGGGAGTTCCTTACAGTGCTGTGCTGAATGACATTGTTCGCATGACCTACGTTGTACATCTGATGCTGGTCTTTCCTCTCGTATTTTTTGCCCTGCGCCTTAATATTGATGGGCTTATCTTTCCAGCCAAAAAGCCCCTTCTTTCGGATAATAAAAGGTTCATCTTGGTCACTACCGTGTTAATTGGAACCATTTTCCTCGGGGCATCATTCATACCCAGTATCTGGGATGCATTTCAGTTCACAGGGGCTACTGCAGCAGTTTGTATTGGGTTCATCTTCCCAGCTTCCATTGCTCTCAGAGATACACATGGAATCTCAACGAAAAAGGATATCTGTCTCTCACTGTTTATGATATTTCTTGCCGTAGTTTCAAGTTCAATTGCAATATTCAGCGACATAAATTCTATGTTCAAGGAAAATGAGGTAGGCCCTCCACGATCTTGA___GGATGGTGTTACTTATCAAAAGAAGCAACGCCTGCATATAAATATAAGGATTTTTGGAGCAGAACAAAGAACAGAAAACTGATCTGGAACCTGATTGTAGAATTGTGAAAGGTGGATAAACTATTGTAAAGCCATTGTAAAGGCATGGATCAGCTAATGATCCGGTGGATCAGCTAGTTTTAAAATATTCACTTGTGTGGAAGGCGAAATTGCCAGTGAAGCTAAATAGTCATTAGTCATGAAAAATCCAGGAGACTATTTGGAACAAGGTCATTAAATTAAATTGTTGTGTATTTATAGGTGTATTATTTAATAATATTTCTTATCTATTTTGTGTCTG

Fln Alignment:

sp_v1.1_unigene32786___MTIVASPERRPRKQNPL-SETSPLLPEKQQDDEYGVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMQVXXXXXXXXXXXFVCFLTDASIDILLRFSRAGAAVSYGGVMGEAFGRIGKMLLQICVVISTLGILIVYMIIIGDVLSGTSSNGVHHAGILEELFGFHWWNGRXXXXXXXXXXXXXXXXSFKRVDSLKXXXXXXXXXXXXXXXXXXGIAIVKLFSGTVQAPRLLPDIVDHTSFLKLFTVVPVIVTAYICHFNVHPIYNELEDPSEMQPIVRTSLALCSIVYIATSFFGVLLFGDQIMDDVLANFDTNLGVPYSAVLNDIVRMTYVVHLMLVFPLVFFALRLNIDGLIFPAKKPLLSDNKRFILVTTVLIGTIFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTHGISTKKDICLSLFMIFLAVVSSSIAIFSDINSMFKEN
D5ACG6_______________MTIVASPERRSRKQKPLVSESSPLLPEKHQDGEDCVHEGFNGASFSGAVFNLSTTVVGAGIMALPATMKVLGLVLGILLIIFVGLLTDASIDILLRFSRAGAAASYGGVMGDAFGRIGKMLLQICVIINNLGILIVYMIIIGDVLSGTSSNGLHHAGILEEWFGFHWWNGRVQILLLTTVLILAPLVSFKKVDSLKFTSALSVALAVVFVVITAGIAIVKLFSGTIQMPRLLPDIVDHTSFLKLFTVVPVIVTAYICHYNVHSIYNELEDPSEMQPIVRTSLALCSIVYITTSFFGFLLFGDQTMDDILANFDTNLGVPYSAVLNDIVRVTYVVHLMLVFPLIFFALRLNLDGLIFPAKKHLVLDNKRFILITAGLIGIVFLGASFIPSIWDAFQFTGATAAVCIGFIFPASIALRDTNGISTKKDIYLSLFMIFLAVVSSSIAIFSDINSMFKKN

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
23	25	75			0.996481
25			66	33	0.997452
62	66	33			0.997452
69	33	66			0.997452
99	33	66			0.997452
110		75		25	0.996473
141	25		75		0.996473
154		75	25		0.99649
170		20	80		0.995505
179		25	75		0.996473
180	20			80	0.995505
189	75		25		0.996473
230	80			20	0.995505
232		71	14		0.984337
233	71		14	14	0.984345
234		14	85		0.993533
236	85	14			0.993533
237		85		14	0.993533
239	14	85			0.993533
243		14	85		0.993533
445		16		83	0.994512
457			20	80	0.995493
538	80	20			0.995493
539	80		20		0.995493
541		25		75	0.996473
543			75	25	0.996473
546	75	25			0.996473
547		25	75		0.996473
548	75			25	0.996473
555		25		75	0.996473
556	25		75		0.996473
558	75	25			0.996473
559	25		75		0.996473
1042		88		11	0.991528
1173	16		83		0.994512
1382		75	25		0.996473
1383			25	75	0.996473
1592		85		14	0.993533
1837			12	87	0.992554
1939			33	33	0.997743

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain