SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32754

Length: 1610 nt

Origin of reads: Biogeco_1 Biogeco_2 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32754

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	U3 small nucleolar RNA-associated protein, putative	-	-	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	81%
Blast2go	protein	-	-	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	megagametogenesis	GO:0009561	Biological Process	0.0	72%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LM47

Fln msg:

Fln protein: MSSLRNAVKRRAHKERAQPAARCKFGLLEKHKDYVLRAGDYHKKQEKIQRLREKAASRNPDEFYFKMINSRTVDGVHCPQTGAKQYSNEELLLMKTQDIQYVFQKAQSEKKKVERLQSALHCIGCPPSNRHIYFAEDREEAKELEQTILSSKEKANNPAQLPKHTQKKIAAAYKELEKTNNRIDELLNKALDLILPRKLRGRGRKGNLHGHRWLTERKR*

Protein Length: 221

Fln nts: CGTCGTGACCTTGGCTGTCACTCTAAATTCATCTATTTCTTCATCTCCAGACAAATCAATACTCTGATCTCCATTCTTAGTTTGACAACAAGTTTATCCCTGTTTAAATGTTGATGGGATAGATAAACTCCCACATAATCTCCAACATCCGTTTTGATAAACAAACCCACCAAAGTGCACTTAAAAAATTTGGCCCTCTAAATCCGCGGGTAAACTTTGGTTCTGTAACTCCTCTACCCGCGATCTTCACTTAAATTCATCTATTTCTTCATCTCCCCTACTGTGCAGGTTCTGAATTCTCTGTGAAGATCAGGCCCTTGGTCAGGCGGCGGGATATAGCGAGTTTGAATTTCAGTAATGTGAATAACCTTGACTCATTCGAATCGAAGGTTGAAGCTCAGGAGATCTGTATGTTGATTGACTGAAGGTTGAAGCTGAAGCAGTTGCCGTCTTGAATTCACTCACTGGTTCACTGAAGAGAGCTTTAGAGCCTGAACTGAAGTTTGAACAGCAGCAACTCAACAGCCGAGAATTTGAACTCTGGACTCTTGAGATTTACGTTATCTAGTTTTCGATT_-_ATGTCGTCGTTAAGAAATGCTGTAAAGCGGCGGGCTCACAAGGAACGCGCCCAGCCGGCTGCAAGGTGTAAATTTGGCTTACTAGAGAAACACAAGGACTATGTACTTAGGGCTGGTGATTACCACAAGAAGCAGGAAAAAATCCAGAGGCTTCGAGAGAAAGCAGCATCTAGAAACCCTGATGAATTTTATTTTAAGATGATCAACTCTAGGACTGTTGATGGAGTGCACTGTCCACAAACTGGTGCAAAGCAATATTCCAATGAGGAACTGTTATTAATGAAGACCCAGGACATTCAGTACGTGTTTCAAAAAGCACAGAGTGAAAAGAAGAAAGTAGAGCGACTTCAGTCTGCACTTCATTGCATTGGTTGCCCTCCTTCAAACAGACACATTTATTTTGCCGAAGACAGGGAGGAGGCAAAAGAATTGGAACAAACAATCTTGTCATCGAAAGAGAAGGCAAATAATCCTGCTCAATTGCCAAAGCATACACAAAAGAAAATTGCTGCAGCATACAAGGAGCTGGAGAAAACAAACAACCGAATAGATGAGTTACTAAACAAAGCGCTGGACTTAATTTTGCCAAGGAAATTGAGGGGGAGGGGCAGAAAAGGGAACCTCCATGGTCATAGATGGCTAACTGAACGGAAACGGTGA___TCTCCGGAAATTTACAATATTTGAATCCCGTCAATTGTTTAAACTTTTGTGTTTAGTTGGATGATAAGCCTGGTTTTGATAATTTGGGCTATTTGTGCATCAATAGATGCAATGGTTTCAAAAAACTTCTTGTTATAAGAGAACTTTACTAAAATGCCTTGGTTTATAGGAGACCTTTACTAAAATGCCTTGGTTTATAAAAAGGTACTTAAATGGCGTTGTTTCCTTTGCTCATTATTGATGGACACAAATGATCTCTTTCAAAAGCATACCAATGGTATTCATGAACCTTTTAAAAAAGTATTCAAATATATAATAACCCATGAATGTCTTTGGTTGGTTTGTCTCATTTGACCTTATGGCATGGATTGCA

Fln Alignment:

sp_v1.1_unigene32754___MSSLRNAVKRRAHKERAQPAARCKFGLLEKHKDYVLRAGDYHKKQEKIQRLREKAASRNPDEFYFKMINSRTVDGVHCPQTGAKQYSNEELLLMKTQDIQYVFQKAQSEKKKVERLQSALHCIGCPPSNRHIYFAEDREEAKELEQTILSSKEKANNPAQLPKHTQKKIAAAYKELEKTNNRIDELLNKALDLIL
B8LM47_______________MSSLRNAVKRRTHKERAQPAARSKFGLLEKHKDYVLRARDYHKKQENIQRLREKAASRNPDEFYFKMINTRTVDGVHRPQSGAKQYSSEELLLMKTQDIQYVLQKAQSEKKKAERLQSALHCIGCRPSNRHTYFAEDREEAKELEQVILSSEEKAIFPAKLPKRIKRKMAGAYKELEERKKRADEMQNIVTEMSL

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
110			16	83	0.994512
248	66	33			1.0
413		80		20	0.999999
600	18			81	1.0
657	14		85		1.0
749	13		86		0.999973
990	33		66		0.999994
1229		50	50		1.0
1337	10		90		0.90298
1370	80			20	0.999999
1416			10	90	0.90298
1513		88		11	0.923564
1518	11		88		0.923564
1555	12		87		0.992554
1604	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain