SustainPineDB

Assembly Name: SustainPine v1.1

UniGene Name: sp_v1.1_unigene32626

Length: 1708 nt

Origin of reads: Biogeco_1 Uagpf Uma

UniGene Fasta

Ace file of the UniGene sp_v1.1_unigene32626

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RAB GTPase activator	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	47%
Blast2go	rab gtpase activator protein	-	-	73%

Source	InterPros	Term	Type	e value	Identity
Blast2go	Rab-GTPase-TBC domain	IPR000195	-	0.0	73%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR92

Fln msg: your sequence is shorter than subject: 312 - 455

Fln protein: RTDRHLEFYGDAKNMARMSDILAVYAWVDPTTGYCQGMSDLLSPFIVLFEDDADAFWCFESLLRRMRPNFQMEGPVGVMKQLEALGRILQLTDIQLFKHLAQIGAESLLFAFRMLLVLFRRELSFDDALCMWEMMWAADFDEAMSWALENNCLEPLVLSPPNTLHRDTHVEYGENTPCSKSDQSEQLDADISVSGNSDAKYFSRSPLCGLRPGNFWPKHGQQHICTMSSLLKKNGDDELSVFCVAAILVLNRSKFIKEIHSMDDAIKMFNDMPFEIKVKRCIRTAIKLRKKYVHKLTKKRGIGILSAKQSS*

Protein Length: 313

Fln nts: AGAACAGACAGACATCTTGAATTCTATGGAGATGCAAAAAACATGGCTCGAATGTCAGATATCCTTGCTGTATATGCCTGGGTGGATCCCACGACTGGTTATTGCCAAGGTATGAGTGATTTGTTATCTCCATTCATTGTACTTTTTGAGGATGATGCGGATGCATTCTGGTGCTTTGAGAGTCTTCTCCGAAGAATGCGACCAAATTTCCAGATGGAAGGTCCTGTTGGTGTGATGAAACAATTAGAAGCCCTGGGAAGAATATTGCAGCTGACTGACATCCAATTATTCAAGCACTTGGCTCAGATTGGCGCAGAGAGTCTTCTCTTTGCATTTCGAATGTTGCTTGTCCTCTTTCGCCGGGAGTTGTCATTCGATGATGCACTTTGTATGTGGGAGATGATGTGGGCTGCTGATTTTGATGAAGCTATGTCATGGGCATTGGAAAATAATTGCCTTGAACCACTGGTCCTGAGCCCTCCAAACACTTTGCATAGAGATACACACGTAGAATATGGAGAAAATACCCCTTGTTCAAAGAGTGATCAGTCTGAACAACTTGATGCAGATATTTCGGTTTCTGGTAACAGTGATGCCAAATATTTTTCTAGAAGCCCATTATGTGGCCTGAGACCAGGCAATTTCTGGCCTAAACATGGCCAGCAACATATTTGTACTATGAGTTCACTCCTCAAGAAAAATGGGGATGATGAGCTGTCTGTCTTTTGTGTAGCAGCCATTCTTGTCCTTAATCGGTCAAAGTTCATCAAGGAGATTCATTCGATGGATGATGCCATTAAGATGTTCAATGACATGCCCTTTGAAATTAAGGTGAAAAGATGTATACGAACAGCCATTAAACTGCGGAAAAAATATGTCCATAAGTTGACCAAGAAAAGAGGAATCGGAATATTATCAGCTAAACAGTCCTCATGA___GTGATAATGAATGGTGTCAAATAAGGTGCCTATATTATTTTGTCCGTCTGAATAAACATGAGTGGTGAGGATGATGCCTTCTTCAGATAAGGGATTGTGGGATTGGATGTCATCTACATCAACCACTAAGATTCTGTTTTGCAGCTTTGTATTTTCTGAACTATTGAATTGAGTTGCCCAAGCATTCAGACTATATTACTTAAGCAGTTTAGAAGTAGTTCACTGAATGTTCGGAGGATTGGTAGAAGCAGGGTATGGAACTGACATTATTTCGAGGTCGTGTAGATTTATATGTATGGAAAAGGCCTTGGGTTGCAGGTATAAAGCATTTGTACAGGTAATGCGATGCATCCTTTATACGTAGACTGAGAAGGAATTGACTCTGGACTGAGGCCTATTCAGTTCAAGTTCTTTCAATTGTTGACTAACAGAAATTATTTCCGGGTTATTCACAGATAAATCTTGGAGACCTGGATACATTTTCCAGAAATTCTGTAAGCCACGAGCTGTAAGATCTAATTTTCCGCTTCTGTATTTTAACTCTTTCAGCTTTGTATTGCTCCTCTGTTGCTCTAAACTGTTGGTTGTTGTTGTTATGGCTTCCATGTATTGGATAAGAACATGGTGCATATCACTTTTTTTGAGAAATTGGCCTGGAAAGTTAAGAACAAGCATTAAACATATGCTGTTCATTCCAACTGATTTTCTAAATGATCCGGGAAATTTGTAAGTTTAGTTGAGTCCAACATGTGATGATATTCACAAAATATTC

Fln Alignment:

sp_v1.1_unigene32626___RTDRHLEFYGDAKNMARMSDILAVYAWVDPTTGYCQGMSDLLSPFIVLFEDDADAFWCFESLLRRMRPNFQMEGPVGVMKQLEALGRILQLTDIQLFKHLAQIGAESLLFAFRMLLVLFRRELSFDDALCMWEMMWA
B8LR92_______________KNDEHLE-PSRKHHAARLVAILETYALYDYDIGYCQGMSDLLSPFVALMDDDYEAFWCFVHFMRIARDNFRLDES-GIRRQLDIVAKIIKAKDPQLYKHLQKLQAEDCFFVYRMVVVLFRRELTFEQTLCLWEVIWA

SNPs (tot: 46)

Position	A %	C %	G %	T %	Probability
942			75	25	0.996473
1033	75		25		0.996473
1103		12		87	0.992554
1104			12	87	0.992554
1110	87	12			0.992554
1114	87		12		0.992554
1115			12	87	0.992554
1119	87	12			0.992554
1121		12		87	0.992554
1122		10		90	0.90298
1123		10	90		0.90298
1125	90	10			0.90298
1128			10	90	0.90298
1129	10		90		0.90298
1132		90		10	0.90298
1133	90			10	0.90298
1134	90		10		0.90298
1137	90			10	0.90298
1138			10	90	0.90298
1144		10	90		0.90298
1202	70		30		1.0
1221	90		10		0.903076
1223		10		90	0.903076
1224	90		10		0.903076
1226			10	90	0.903134
1227	10			90	0.903101
1229		10	90		0.903056
1230	90			10	0.903076
1231			88	11	0.923564
1233			11	88	0.923564
1239	88	11			0.923564
1240	11		88		0.923564
1241	88	11			0.923564
1243		11		88	0.923564
1244	11			88	0.923564
1396			28	71	1.0
1437		14		85	0.993533
1477		11		88	0.923574
1478			11	88	0.923574
1482		88		11	0.923564
1486		14		85	0.993533
1491			16	83	0.994513
1492	83	16			0.994512
1495			20	80	0.995494
1497	80	20			0.995493
1502	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain